Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000983.1 Hibiscus syriacus cultivar Beakdansim tig00001967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94240

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2933--3246
54
5.8
53
82
3
387
27
15
19
37
1.92
2933--3246
107
2.9
108
88
2
454
27
15
19
37
1.92
2933--3239
161
1.9
161
84
2
411
27
15
19
37
1.92
5555--5757
93
2.2
93
84
2
257
32
16
18
33
1.93
5857--5903
21
2.2
21
100
0
94
25
19
4
51
1.65
6162--6720
74
7.5
74
83
2
629
37
10
18
33
1.85
6265--6719
36
12.3
38
67
8
213
38
9
19
32
1.84
6162--6719
222
2.5
222
84
2
692
37
10
18
33
1.85
8839--8899
29
2.1
30
93
3
106
59
9
16
14
1.61
13457--13569
39
2.9
39
80
8
108
48
1
13
36
1.53
13473--13573
39
2.6
40
81
9
113
49
1
12
35
1.53
18204--18242
21
1.9
20
85
15
53
48
25
7
17
1.74
27778--28021
3
78.7
3
84
8
269
28
2
2
66
1.19
27779--28015
94
2.5
94
91
3
372
28
2
2
66
1.19
30595--30637
21
2.0
21
91
8
70
20
11
2
65
1.36
33722--33771
16
3.3
15
84
15
68
80
6
14
0
0.90
33722--33771
15
3.4
14
83
10
64
80
6
14
0
0.90
35326--36066
106
7.0
106
94
0
1257
34
25
18
22
1.96
36264--36778
254
2.0
259
96
3
970
32
20
18
28
1.96
36780--36811
2
17.0
2
87
12
50
50
0
0
50
1.00
36780--36810
13
2.4
13
94
0
53
51
0
0
48
1.00
42607--42658
19
2.7
19
91
5
79
50
17
19
13
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47266--47316
24
2.1
24
100
0
102
31
23
9
35
1.87
50388--50763
119
3.2
119
81
6
424
38
15
20
25
1.92
50864--50973
3
37.0
3
82
8
91
26
3
6
63
1.35
58344--58417
6
11.8
6
72
13
51
8
20
0
71
1.11
58337--58417
26
3.2
25
81
11
101
9
18
0
71
1.13
59480--59533
26
2.1
26
92
0
90
24
14
25
35
1.94
63402--63460
26
2.3
26
88
2
84
25
11
27
35
1.91
65271--65334
17
3.7
17
87
2
92
32
9
28
29
1.88
68125--68149
13
1.9
13
100
0
50
52
0
0
48
1.00
74271--74623
105
3.4
105
89
0
517
24
19
17
38
1.93
75667--75861
52
3.8
52
74
6
198
42
18
10
29
1.83
76078--76191
36
3.2
35
79
7
122
37
14
20
28
1.91
76320--76693
37
10.8
37
68
17
203
43
9
16
30
1.79
76330--76693
103
3.5
103
91
0
604
44
9
15
29
1.79
80529--80600
6
12.0
6
81
0
90
47
16
18
18
1.83
80528--80599
12
6.0
12
88
0
108
45
16
19
18
1.85
82158--82199
21
2.1
20
86
8
59
30
0
30
38
1.58
88071--88111
21
1.9
22
95
5
75
9
29
34
26
1.88
88754--88803
15
3.3
15
94
0
91
14
22
34
30
1.93
92385--92418
16
2.2
16
89
5
52
23
0
38
38
1.55

Tables:   1

The End!