genome.fa.s986.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000986.1 Hibiscus syriacus cultivar Beakdansim tig00001976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69013

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304--375	26	3.0	24	68	27	62	26	6	4	62	1.39
4301--4330	15	2.0	15	93	0	51	50	26	10	13	1.73
20698--20775	40	1.9	41	87	7	115	25	29	15	29	1.96
21380--21415	2	18.0	2	100	0	72	50	0	0	50	1.00
21479--21505	10	2.7	10	100	0	54	55	11	0	33	1.35
21343--21534	101	1.9	100	81	4	233	50	4	3	42	1.37
21662--21696	18	1.9	18	88	0	52	60	2	0	37	1.12
21653--21709	30	1.9	30	85	7	80	59	3	1	35	1.25
28315--28408	21	4.5	21	86	5	109	19	31	26	22	1.97
28931--29028	34	2.9	34	87	0	133	56	4	3	36	1.34
29426--29776	128	2.7	128	99	0	693	32	22	25	19	1.98
29857--29897	8	5.2	8	82	5	57	36	29	0	34	1.58
30687--31034	173	2.0	173	99	0	687	29	21	19	29	1.98
37039--37114	33	2.2	34	80	15	86	30	0	5	64	1.15
37100--37159	24	2.7	21	76	14	57	38	0	1	60	1.07
38855--38902	21	2.3	21	85	0	60	25	39	12	22	1.89
38906--38999	21	4.5	21	89	5	120	18	34	26	21	1.96
39522--39618	33	2.9	34	85	3	133	55	4	3	37	1.35
39520--39625	34	3.2	33	82	8	133	54	4	2	37	1.36
40005--40484	126	3.8	126	98	0	926	31	19	26	22	1.98
40552--40592	8	5.2	8	82	5	57	36	29	0	34	1.58
44243--44279	6	6.3	6	96	3	67	0	35	13	51	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46572--46597	5	5.2	5	100	0	52	80	0	0	19	0.71
48631--48656	2	13.0	2	100	0	52	0	50	0	50	1.00
54816--54840	2	12.5	2	100	0	50	48	0	0	52	1.00
56606--56630	2	12.5	2	100	0	50	48	0	0	52	1.00
60107--60231	21	5.9	20	70	14	74	24	19	21	34	1.96
60131--60228	43	2.3	43	87	1	144	24	17	21	36	1.94
60168--60232	19	3.2	19	70	16	58	27	18	20	33	1.96
60106--60238	42	3.1	42	75	8	119	26	19	21	33	1.97
60327--60366	21	1.9	21	100	0	80	35	35	27	2	1.71
61004--61040	6	6.2	6	100	0	74	0	16	51	32	1.45
61132--61225	21	4.6	20	79	12	93	32	25	21	20	1.97
61132--61218	19	4.3	19	80	13	102	32	25	21	20	1.98
61135--61215	42	2.0	40	92	4	135	33	27	19	19	1.96
61139--61245	40	2.6	41	82	5	128	34	24	21	19	1.96
61208--61244	19	1.9	19	94	0	65	32	18	27	21	1.97

Tables:   1

The End!