Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000099.1 Hibiscus syriacus cultivar Beakdansim tig00000182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100424

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5387--5612
114
2.0
114
94
0
398
32
15
21
30
1.94
8934--9126
76
2.6
75
90
4
302
21
21
22
34
1.97
9061--9207
45
3.3
45
96
0
260
21
24
22
31
1.98
9150--9656
76
6.7
76
92
1
786
23
20
22
33
1.97
9790--9896
3
35.7
3
88
3
144
38
0
0
60
1.03
9792--9909
18
6.2
19
76
10
82
41
0
0
57
1.04
10240--10317
29
2.7
30
77
15
92
67
8
23
0
1.18
10982--11029
21
2.4
19
79
6
51
37
2
4
56
1.30
32178--32216
18
2.1
19
85
4
53
41
7
7
43
1.62
35248--35290
18
2.4
18
92
7
70
20
4
0
74
1.00
35309--35411
35
2.9
35
81
12
106
22
8
0
68
1.16
40818--40910
5
18.8
5
67
14
50
20
8
1
69
1.20
40818--40868
11
4.8
11
79
11
54
17
9
0
72
1.11
42730--42904
76
2.3
76
82
8
223
31
1
9
57
1.41
43535--43577
18
2.4
18
88
7
61
20
6
0
72
1.08
43618--43712
3
31.0
3
69
23
56
29
2
0
68
1.01
43601--43682
28
2.9
28
78
8
94
24
6
0
69
1.11
60680--60706
12
2.2
12
100
0
54
11
18
22
48
1.79
62305--62335
16
1.9
16
100
0
62
38
9
0
51
1.35
66189--66276
45
1.9
46
90
2
142
29
19
23
27
1.98
71213--71300
45
1.9
46
88
2
133
29
18
23
28
1.98
72351--72391
3
13.3
3
85
14
57
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72713--73174
113
4.0
112
81
8
541
28
18
14
39
1.89
79551--79643
46
2.0
46
97
0
177
24
15
13
46
1.82
85511--85563
3
17.3
3
84
11
72
64
1
0
33
1.05
86922--86962
20
2.0
20
95
0
73
43
7
26
21
1.79
87222--87259
21
1.9
20
89
10
60
52
0
0
47
1.00
87702--87743
20
2.0
20
90
4
66
42
7
4
45
1.52
89960--90051
46
2.0
46
85
8
125
53
14
5
27
1.62
89971--90051
23
3.5
23
86
6
110
54
12
6
27
1.61
92903--93005
45
2.3
45
81
5
111
33
18
21
27
1.96
93853--93922
18
3.9
18
92
0
113
17
24
34
24
1.96

Tables:   1

The End!