genome.fa.s992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000992.1 Hibiscus syriacus cultivar Beakdansim tig00001986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82764

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3893--3950	30	1.9	30	89	0	89	25	13	18	41	1.88
11009--11177	63	2.7	63	95	0	293	4	43	9	42	1.56
11944--11986	18	2.4	18	88	3	61	62	2	0	34	1.08
12909--12953	22	2.0	22	86	0	63	51	4	2	42	1.34
13728--13784	12	4.8	12	70	8	53	50	17	14	17	1.77
13716--13821	24	4.5	24	71	9	85	49	16	16	17	1.81
17707--17792	9	9.4	9	78	14	79	61	0	1	37	1.04
17697--17802	43	2.4	43	88	4	158	59	0	0	39	1.04
29945--30001	30	1.9	30	85	7	80	49	0	28	22	1.50
29945--30015	10	7.1	10	77	4	63	45	0	33	21	1.52
29950--30002	20	2.7	20	84	0	70	49	0	30	20	1.50
30684--30776	46	2.1	44	91	4	150	34	7	31	26	1.84
31019--31066	20	2.4	20	80	16	55	43	0	4	52	1.20
31083--31490	31	13.7	30	74	13	240	39	5	1	52	1.35
31074--31490	29	14.0	30	72	14	217	39	5	2	52	1.36
31069--31366	90	3.3	89	72	13	263	38	4	2	54	1.33
31259--31420	27	5.6	28	74	13	107	41	6	3	48	1.45
31314--31437	57	2.2	54	78	9	133	42	7	3	46	1.47
31526--31590	32	2.0	32	100	0	130	23	21	27	27	1.99
32097--32139	20	2.2	20	87	8	61	44	0	0	55	0.99
32245--32296	18	2.7	19	73	5	52	61	1	13	23	1.42
32246--32304	19	3.0	20	70	9	59	55	1	16	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37741--37817	31	2.5	31	84	0	100	31	12	29	25	1.93
41333--41614	142	2.0	142	97	0	528	37	19	9	32	1.84
42986--43048	20	3.3	20	78	6	69	53	0	1	44	1.10
45011--45050	21	1.9	21	84	0	53	37	5	17	40	1.72
45932--45963	2	16.0	2	100	0	64	50	0	0	50	1.00
46995--47028	17	2.1	16	94	5	59	41	14	5	38	1.70
52217--52247	2	15.5	2	100	0	62	48	0	0	51	1.00
55328--55425	33	3.0	33	87	3	135	7	25	25	41	1.80
57122--57278	74	2.1	77	84	5	205	61	12	5	21	1.51
63813--63865	21	2.5	21	93	0	88	30	32	20	16	1.95
63861--63971	21	5.3	20	73	11	64	19	19	23	36	1.95
63877--64020	21	6.8	21	74	13	134	20	20	24	34	1.96
63861--64020	42	3.8	42	90	4	234	21	20	23	35	1.96
64772--64796	6	4.2	6	100	0	50	0	16	48	36	1.46
64835--64874	21	1.9	21	89	0	62	42	12	17	27	1.85
65304--65363	21	3.2	20	65	30	51	31	6	18	43	1.76
65297--65404	35	3.0	36	89	5	164	30	5	18	45	1.72
69938--69998	21	3.2	21	65	29	64	31	4	21	42	1.74
69930--70038	35	3.0	36	93	5	184	29	5	20	44	1.73
70715--70775	19	3.2	19	100	0	122	27	21	16	34	1.95
73720--73794	11	6.8	11	82	0	78	45	17	1	36	1.57
73720--73794	33	2.3	33	90	0	114	45	17	1	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73723--73794	22	3.3	22	82	0	90	44	18	1	36	1.58

Tables:   1

The End!