Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000993.1 Hibiscus syriacus cultivar Beakdansim tig00001987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72146

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2328--2479
42
3.6
41
86
5
214
17
17
25
38
1.92
6369--6476
42
2.6
42
82
11
132
37
20
13
28
1.91
7827--8017
41
4.6
41
80
7
174
33
17
14
35
1.90
7837--7998
41
3.9
42
83
4
188
32
16
14
36
1.89
7846--8042
82
2.4
83
82
7
215
29
17
15
37
1.91
8025--8166
42
3.5
39
76
14
119
22
18
21
37
1.94
8006--8164
82
1.9
82
87
6
232
24
18
20
35
1.95
10790--10842
20
2.7
20
96
0
97
24
13
22
39
1.90
11017--11067
20
2.5
20
93
0
84
27
19
19
33
1.96
20769--20858
2
45.0
2
100
0
180
50
0
0
50
1.00
24193--24262
12
5.8
12
78
6
70
15
14
18
51
1.77
24194--24266
24
3.0
24
81
0
101
17
12
17
52
1.75
24199--24250
17
2.8
18
72
21
54
15
15
19
50
1.79
43862--43917
24
2.3
24
100
0
112
35
30
8
25
1.86
46586--46676
31
2.9
31
74
9
87
38
5
7
48
1.55
64844--64880
14
2.4
16
91
8
60
8
43
2
45
1.47
71429--71482
24
2.2
24
96
0
99
42
20
16
20
1.89
71429--71496
24
2.8
24
88
0
73
39
20
16
23
1.91

Tables:   1

The End!