Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000995.1 Hibiscus syriacus cultivar Beakdansim tig00001992_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55952

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5653--5697
22
2.0
23
91
4
74
44
0
0
55
0.99
6111--6164
2
28.0
2
76
14
51
50
0
1
48
1.11
6112--6179
36
1.9
36
87
3
102
47
0
2
50
1.16
6160--6218
26
2.1
28
87
9
86
45
1
8
44
1.44
6227--6362
39
3.2
44
81
16
178
44
0
8
46
1.38
6226--6362
46
3.1
46
80
15
166
44
0
8
46
1.38
6227--6406
85
2.2
81
87
9
249
43
0
7
48
1.34
6315--6397
35
2.4
34
84
11
98
43
0
7
49
1.30
6397--6456
17
3.4
18
84
9
79
25
0
1
73
0.93
7521--7550
10
3.0
10
100
0
60
20
10
10
60
1.57
7559--7664
48
2.1
50
81
14
123
18
7
4
68
1.31
7647--7720
15
4.9
14
73
15
58
16
2
2
78
0.98
7650--7709
30
2.0
31
83
3
77
16
1
3
78
0.97
7648--7724
27
2.9
26
72
16
68
18
2
2
76
1.02
13295--13373
23
3.7
21
76
14
81
21
18
35
24
1.96
13594--13633
21
1.9
21
89
0
62
50
10
10
30
1.69
14738--14775
19
2.0
20
94
5
69
34
13
5
47
1.65
16757--16814
21
2.8
21
89
0
98
17
17
43
22
1.88
19085--19242
85
1.8
86
82
6
205
34
20
17
26
1.95
21650--21793
44
3.3
43
78
12
150
20
6
1
71
1.16
21692--21759
20
3.3
20
76
11
84
17
4
0
77
0.92
21873--21902
13
2.3
13
100
0
60
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23200--23245
19
2.5
18
85
3
56
32
2
13
52
1.52
23718--23786
23
3.0
23
82
0
93
18
24
24
31
1.98
24146--24170
3
8.3
3
100
0
50
68
0
0
32
0.90
34975--35022
25
2.0
24
83
4
60
25
12
4
58
1.52
37825--37907
22
3.9
22
79
20
97
43
0
0
56
0.99
37825--37896
3
24.3
3
78
13
78
41
0
0
58
0.98
39190--39223
2
17.0
2
87
0
50
55
0
0
44
0.99
39320--39382
33
2.0
33
84
6
85
41
0
1
57
1.08
39296--39583
134
2.2
131
78
8
296
37
8
9
43
1.69
39567--39623
27
2.1
28
83
9
73
45
3
0
50
1.18
44735--44773
2
20.0
2
94
5
71
48
0
0
51
1.00
45067--45118
23
2.3
23
86
0
68
80
1
17
0
0.80
45078--45124
13
3.8
13
78
16
55
80
2
17
0
0.80
45729--45788
32
1.9
32
90
6
97
45
20
16
18
1.86
47417--47634
114
1.9
112
90
1
346
33
15
20
29
1.94
50939--51870
76
12.4
76
95
2
1679
23
19
22
34
1.96
52021--52088
20
3.3
21
78
15
72
42
1
0
55
1.08
52021--52077
3
19.3
3
76
16
57
40
1
0
57
1.09

Tables:   1

The End!