Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000996.1 Hibiscus syriacus cultivar Beakdansim tig00001994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64172
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:786 original size:15 final size:15
Alignment explanation
Indices: 766--796 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
756 TACAGCTTAT
766 CATAAGTTGAACACA
1 CATAAGTTGAACACA
781 CATAAGTTGAACACA
1 CATAAGTTGAACACA
796 C
1 C
797 TTGTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.19
Consensus pattern (15 bp):
CATAAGTTGAACACA
Found at i:1450 original size:20 final size:20
Alignment explanation
Indices: 1427--1478 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
1417 ATTTCCAGAT
*
1427 TCGCAACGCGATTTTGACTA
1 TCGCAACGCGATTCTGACTA
1447 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTA
1467 TCGCAACGCGAT
1 TCGCAACGCGAT
1479 AACACAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTA
Found at i:1523 original size:21 final size:21
Alignment explanation
Indices: 1466--1526 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
1456 GATTCTGACT
*
1466 ATCGCAACGCGATAACACAAA
1 ATCGCAACGCGATAATACAAA
1487 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
*
1508 ATCGCAATGCGATAATACA
1 ATCGCAACGCGATAATACA
1527 CGTATTAACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.46, C:0.25, G:0.15, T:0.15
Consensus pattern (21 bp):
ATCGCAACGCGATAATACAAA
Found at i:1972 original size:19 final size:20
Alignment explanation
Indices: 1947--2037 Score: 105
Period size: 19 Copynumber: 4.4 Consensus size: 20
1937 CTTATTTTGA
1947 ATTTTTCACTATCGCAACAC
1 ATTTTTCACTATCGCAACAC
1967 -TTTTTCACTATCGCAACAACAC
1 ATTTTTCACTATCG---CAACAC
*
1989 ATTTTTCAAACTCTCGCAACAC
1 ATTTTTC--ACTATCGCAACAC
*
2011 A-TTTTAACTATCGCAACAC
1 ATTTTTCACTATCGCAACAC
2030 ATTTTTCA
1 ATTTTTCA
2038 AAATCGCATT
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
19 26 0.43
20 5 0.08
21 4 0.07
22 13 0.22
23 6 0.10
25 6 0.10
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (20 bp):
ATTTTTCACTATCGCAACAC
Found at i:2009 original size:44 final size:41
Alignment explanation
Indices: 1958--2039 Score: 119
Period size: 44 Copynumber: 1.9 Consensus size: 41
1948 TTTTTCACTA
* *
1958 TCGCAACACTTTTTCACTATCGCAACAACACATTTTTCAAACTC
1 TCGCAACACATTTTAACTATCG---CAACACATTTTTCAAACTC
2002 TCGCAACACATTTTAACTATCGCAACACATTTTTCAAA
1 TCGCAACACATTTTAACTATCGCAACACATTTTTCAAA
2040 ATCGCATTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 16 0.44
44 20 0.56
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (41 bp):
TCGCAACACATTTTAACTATCGCAACACATTTTTCAAACTC
Found at i:2743 original size:20 final size:20
Alignment explanation
Indices: 2718--2764 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
2708 ACGAATTTGC
2718 CAAATTCGAAACTCAGTTTT
1 CAAATTCGAAACTCAGTTTT
*
2738 CAAATTCGCAACTCAGTTTT
1 CAAATTCGAAACTCAGTTTT
2758 CAAATTC
1 CAAATTC
2765 ACAACTCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (20 bp):
CAAATTCGAAACTCAGTTTT
Found at i:2769 original size:20 final size:20
Alignment explanation
Indices: 2718--2771 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
2708 ACGAATTTGC
2718 CAAATTCGA-AACTCAGTTTT
1 CAAATTC-ACAACTCAGTTTT
*
2738 CAAATTCGCAACTCAGTTTT
1 CAAATTCACAACTCAGTTTT
2758 CAAATTCACAACTC
1 CAAATTCACAACTC
2772 GAATTCGGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (20 bp):
CAAATTCACAACTCAGTTTT
Found at i:2789 original size:20 final size:19
Alignment explanation
Indices: 2740--2998 Score: 189
Period size: 20 Copynumber: 12.9 Consensus size: 19
2730 TCAGTTTTCA
** *
2740 AATTCGCAACTCAGTTTTCA
1 AATTCGCAACTC-GAATTCG
*
2760 AATTCACAACTCGAATTCGG
1 AATTCGCAACTCGAATTC-G
*
2780 ATTTCGCAACTCGAATTCG
1 AATTCGCAACTCGAATTCG
*
2799 CCAATTTCACAACTC-AATTTTCG
1 --AA-TTCGCAACTCGAA--TTCG
* * *
2822 AATTCGTAACTTGAATATGG
1 AATTCGCAACTCGAAT-TCG
* * *
2842 ATTTCGTAACTTGAAAATT-G
1 AATTCGCAACTCG--AATTCG
*
2862 AATTCGCAACTCGAAAATCG
1 AATTCGCAACTCG-AATTCG
*
2882 AATTCGCAACTCGAAAATCG
1 AATTCGCAACTCG-AATTCG
* *
2902 AATTCGCAACTCAAAAATCG
1 AATTCGCAACTC-GAATTCG
2922 AATTCGCAACTCGAATTTCG
1 AATTCGCAACTCGAA-TTCG
*
2942 AATTCGCAACTCGAAAATCG
1 AATTCGCAACTCG-AATTCG
*
2962 AATTCGCAACTCGAAAATCG
1 AATTCGCAACTCG-AATTCG
*
2982 AATTCGCAAATCGAATT
1 AATTCGCAACTCGAATT
2999 TCATTTTTGA
Statistics
Matches: 202, Mismatches: 23, Indels: 29
0.80 0.09 0.11
Matches are distributed among these distances:
19 15 0.07
20 161 0.80
21 10 0.05
22 12 0.06
23 4 0.02
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.28
Consensus pattern (19 bp):
AATTCGCAACTCGAATTCG
Found at i:2865 original size:40 final size:40
Alignment explanation
Indices: 2819--2996 Score: 248
Period size: 40 Copynumber: 4.5 Consensus size: 40
2809 AACTCAATTT
* * * * * * *
2819 TCGAATTCGTAACTTGAATATGGATTTCGTAACTTGAAAA
1 TCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
*
2859 TTGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
1 TCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
* **
2899 TCGAATTCGCAACTCAAAAATCGAATTCGCAACTCGAATT
1 TCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
2939 TCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
1 TCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
*
2979 TCGAATTCGCAAATCGAA
1 TCGAATTCGCAACTCGAA
2997 TTTCATTTTT
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (40 bp):
TCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAA
Found at i:2997 original size:60 final size:60
Alignment explanation
Indices: 2740--3000 Score: 269
Period size: 60 Copynumber: 4.3 Consensus size: 60
2730 TCAGTTTTCA
* * * * * *
2740 AATTCGCAACTC-AGTTTTCAAATTCACAACTCG-AATTCGGATTTCGCAACTCG-AATTCG
1 AATTCGCAACTCGA-ATTTCGAATTCGCAACTCGAAAATC-GAATTCGCAACTCGAAAATCG
* * * * * * * * *
2799 CCAATTTCACAACTC-AATTTTCGAATTCGTAACTTGAATATGGATTTCGTAACTTGAAAATTG
1 --AA-TTCGCAACTCGAA-TTTCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAATCG
** *
2862 AATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAATCGAATTCGCAACTCAAAAATCG
1 AATTCGCAACTCGAATTTCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAATCG
2922 AATTCGCAACTCGAATTTCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAATCG
1 AATTCGCAACTCGAATTTCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAATCG
*
2982 AATTCGCAAATCGAATTTC
1 AATTCGCAACTCGAATTTC
3001 ATTTTTGAGT
Statistics
Matches: 166, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
60 118 0.71
61 6 0.04
62 36 0.22
63 6 0.04
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (60 bp):
AATTCGCAACTCGAATTTCGAATTCGCAACTCGAAAATCGAATTCGCAACTCGAAAATCG
Found at i:3022 original size:20 final size:20
Alignment explanation
Indices: 2995--3052 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
2985 TCGCAAATCG
*
2995 AATTTCATTTTTGAGTTGCA
1 AATTTCATTTTAGAGTTGCA
*
3015 ATTTTCATTTTAGAGTTGCA
1 AATTTCATTTTAGAGTTGCA
*
3035 AATTTCATTTTCGAGTTG
1 AATTTCATTTTAGAGTTG
3053 TGATTTTCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.50
Consensus pattern (20 bp):
AATTTCATTTTAGAGTTGCA
Found at i:4038 original size:24 final size:24
Alignment explanation
Indices: 4021--4078 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
4011 GTCAGTATTT
4021 GAAATTTGATCTTGGTCAATACTC
1 GAAATTTGATCTTGGTCAATACTC
* *
4045 GGACTTTGATCTTGGTCAATACTC
1 GAAATTTGATCTTGGTCAATACTC
* *
4069 GGATTTTGAT
1 GAAATTTGAT
4079 GATGTTTCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (24 bp):
GAAATTTGATCTTGGTCAATACTC
Found at i:4327 original size:3 final size:3
Alignment explanation
Indices: 4319--4346 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
4309 ATATAACCCT
4319 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
4347 TCCCCGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8977 original size:20 final size:22
Alignment explanation
Indices: 8929--8986 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
8919 GCATGGGTAG
*
8929 TGCATCGATGCACATGTTAAAGGA
1 TGCATCGATGCAC-TGTT-AAGAA
8953 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
8973 TGCATCGATGCACT
1 TGCATCGATGCACT
8987 TCAAGGGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:9719 original size:13 final size:13
Alignment explanation
Indices: 9697--9740 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
9687 GAAATGTGAT
*
9697 AAAGAGCTATGTG
1 AAAGAACTATGTG
9710 AAAGAACTATGTG
1 AAAGAACTATGTG
*
9723 ATATGAA-TATGTG
1 A-AAGAACTATGTG
9736 AAAGA
1 AAAGA
9741 CCATGTCATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 3 0.11
13 20 0.74
14 4 0.15
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (13 bp):
AAAGAACTATGTG
Found at i:12820 original size:63 final size:64
Alignment explanation
Indices: 12692--12831 Score: 160
Period size: 63 Copynumber: 2.2 Consensus size: 64
12682 GCATAAGGAA
* *
12692 TGCATCGATGCACCCGTTTAAAATACAAACATCGAATGTCATCAGTGTATCGATGCACAAATAG
1 TGCATCGATGCACCCGCTTAAAATACAAACATCGAAGGTCATCAGTGTATCGATGCACAAATAG
* * * ****
12756 TGCATCGATGCACCC-CTTAATATTA-AAACATCGAAGGTGAGT-TGTGTATCGATGCATGGGTA
1 TGCATCGATGCACCCGCTTAA-AATACAAACATCGAAGGTCA-TCAGTGTATCGATGCACAAATA
12818 G
64 G
12819 TGCATCGATGCAC
1 TGCATCGATGCAC
12832 ATGTTAAAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
63 46 0.71
64 19 0.29
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (64 bp):
TGCATCGATGCACCCGCTTAAAATACAAACATCGAAGGTCATCAGTGTATCGATGCACAAATAG
Found at i:12867 original size:20 final size:22
Alignment explanation
Indices: 12819--12876 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
12809 GCATGGGTAG
*
12819 TGCATCGATGCACATGTTAAAGGA
1 TGCATCGATGCAC-TGTT-AAGAA
12843 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
12863 TGCATCGATGCACT
1 TGCATCGATGCACT
12877 TCAAGGGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:14240 original size:21 final size:21
Alignment explanation
Indices: 14222--14273 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
14212 ATGTGGATTT
14222 TGAACGATGTGG-GGTGGATCC
1 TGAACGATG-GGAGGTGGATCC
14243 TGAACGATGGGAGGTGGATCC
1 TGAACGATGGGAGGTGGATCC
14264 TGAACGATGG
1 TGAACGATGG
14274 AAGGGGCCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.23, C:0.13, G:0.42, T:0.21
Consensus pattern (21 bp):
TGAACGATGGGAGGTGGATCC
Found at i:14781 original size:63 final size:63
Alignment explanation
Indices: 14682--14834 Score: 209
Period size: 63 Copynumber: 2.4 Consensus size: 63
14672 TCTCACGTAG
* ** * *
14682 ACCTCATTACGTAAAGCACC-ATTGTCATCACGTAAAGCACCATTGTCATCATATAAAACACCT
1 ACCTCATCACGTAAAGCACCTA-CCTCATCACATAAAGCACCATTGTCATCACATAAAACACCT
* * *
14745 ACCTCATCACGTAAAGCACCTACCTCATCATATAAAGCACCATTGTCATCACGTAAAGCACCT
1 ACCTCATCACGTAAAGCACCTACCTCATCACATAAAGCACCATTGTCATCACATAAAACACCT
*
14808 ACCTTATCACGTAAAGCACCTACCTCA
1 ACCTCATCACGTAAAGCACCTACCTCA
14835 ACTCGTAAAG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
63 79 0.99
64 1 0.01
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.24
Consensus pattern (63 bp):
ACCTCATCACGTAAAGCACCTACCTCATCACATAAAGCACCATTGTCATCACATAAAACACCT
Found at i:14828 original size:21 final size:21
Alignment explanation
Indices: 14682--14857 Score: 151
Period size: 21 Copynumber: 8.4 Consensus size: 21
14672 TCTCACGTAG
*
14682 ACCTCATTACGTAAAGCACC-
1 ACCTCATCACGTAAAGCACCT
**
14702 ATTGTCATCACGTAAAGCACC-
1 A-CCTCATCACGTAAAGCACCT
** ** *
14723 ATTGTCATCATATAAAACACCT
1 A-CCTCATCACGTAAAGCACCT
14745 ACCTCATCACGTAAAGCACCT
1 ACCTCATCACGTAAAGCACCT
**
14766 ACCTCATCATATAAAGCACC-
1 ACCTCATCACGTAAAGCACCT
**
14786 ATTGTCATCACGTAAAGCACCT
1 A-CCTCATCACGTAAAGCACCT
*
14808 ACCTTATCACGTAAAGCACCT
1 ACCTCATCACGTAAAGCACCT
* * *
14829 ACCTCAACTCGTAAAGCACTT
1 ACCTCATCACGTAAAGCACCT
*
14850 AACTCATC
1 ACCTCATC
14858 CCATGGAGGT
Statistics
Matches: 126, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
20 2 0.02
21 122 0.97
22 2 0.02
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.24
Consensus pattern (21 bp):
ACCTCATCACGTAAAGCACCT
Found at i:15058 original size:42 final size:42
Alignment explanation
Indices: 14957--15080 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 42
14947 GTGATGGAAT
*
14957 AGGTGATGGATCTCGATGTCGAGGTGTAGAGTTGGCT--A-G
1 AGGTGATGGATCTCGATGTCGAGGTGTAGAATTGGCTCGATG
14996 AGGTGATGGATCTCGATGTCGAGGTGTAGAATTGGCTCGATG
1 AGGTGATGGATCTCGATGTCGAGGTGTAGAATTGGCTCGATG
* * * * *
15038 AGGTGATGGATCTTGGTGTCGAAGTGGAGAATTGACTCGATG
1 AGGTGATGGATCTCGATGTCGAGGTGTAGAATTGGCTCGATG
15080 A
1 A
15081 AAAAGTAGGG
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 36 0.47
41 1 0.01
42 39 0.51
ACGTcount: A:0.23, C:0.10, G:0.39, T:0.28
Consensus pattern (42 bp):
AGGTGATGGATCTCGATGTCGAGGTGTAGAATTGGCTCGATG
Found at i:16550 original size:14 final size:13
Alignment explanation
Indices: 16518--16553 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
16508 TATTAGCAAG
16518 TATACAAATTATA
1 TATACAAATTATA
16531 TA-ACAAATTATA
1 TATACAAATTATA
16543 TACTACAAATT
1 TA-TACAAATT
16554 CACTATGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.57
13 2 0.10
14 7 0.33
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (13 bp):
TATACAAATTATA
Found at i:16794 original size:25 final size:25
Alignment explanation
Indices: 16766--16833 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
16756 AATCTGGCAT
*
16766 ATTAAAATACCCATGAGAATCTGCC
1 ATTAACATACCCATGAGAATCTGCC
16791 ATTAACATACCCATGAGAATCTGCC
1 ATTAACATACCCATGAGAATCTGCC
16816 ATTAACATACCCATGAGA
1 ATTAACATACCCATGAGA
16834 CCACCTTGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.24
Consensus pattern (25 bp):
ATTAACATACCCATGAGAATCTGCC
Found at i:17184 original size:35 final size:29
Alignment explanation
Indices: 17101--17171 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
17091 GTTTTGAGTA
17101 GGGATTGCAATAATCAGAATCAGCTTGAT
1 GGGATTGCAATAATCAGAATCAGCTTGAT
17130 GGGATTGCAATAATCAGAATCAGCTTGAT
1 GGGATTGCAATAATCAGAATCAGCTTGAT
17159 GGGATTGCAATAA
1 GGGATTGCAATAA
17172 AATTAAAGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (29 bp):
GGGATTGCAATAATCAGAATCAGCTTGAT
Found at i:17672 original size:20 final size:20
Alignment explanation
Indices: 17649--17698 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
17639 AGAAAATCGA
*
17649 GTTGCGAAATC-AAAATTAGT
1 GTTGCGAAATCGAAAACT-GT
* *
17669 GTTGCGAATTCGGAAACTGT
1 GTTGCGAAATCGAAAACTGT
17689 GTTGCGAAAT
1 GTTGCGAAAT
17699 TGGCTTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (20 bp):
GTTGCGAAATCGAAAACTGT
Found at i:33040 original size:17 final size:18
Alignment explanation
Indices: 33006--33045 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
32996 TTTCTAATAG
33006 AAAATATATAGAAAAATTT
1 AAAATATATA-AAAAATTT
* *
33025 AAAATATATAATAATTTT
1 AAAATATATAAAAAATTT
33043 AAA
1 AAA
33046 TTTTGAGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
AAAATATATAAAAAATTT
Found at i:45929 original size:23 final size:25
Alignment explanation
Indices: 45887--45933 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
45877 AACTTCATAT
*
45887 TATTTATATATATATATTTTTAAAA
1 TATTTAAATATATATATTTTTAAAA
45912 TATTTAAATATA-AT-TTTTTAAA
1 TATTTAAATATATATATTTTTAAA
45934 CATAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 2 0.10
25 11 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTAAATATATATATTTTTAAAA
Found at i:46444 original size:36 final size:33
Alignment explanation
Indices: 46364--46515 Score: 109
Period size: 36 Copynumber: 4.4 Consensus size: 33
46354 TATATATATT
46364 AATATAGA-ATAATTTTTGAAAAT-ATTTTTAAA
1 AATATA-ATATAATTTTTGAAAATGATTTTTAAA
46396 AATATAATATATAATTTTTAGAAAATGATTTTTGAAA
1 AATAT-A-ATATAATTTTT-GAAAATGATTTTT-AAA
* *
46433 ACATATAATAT-ATTGTTTAAAAAT--TGTTTTATA
1 A-ATATAATATAATT-TTTGAAAATGAT-TTTTAAA
* *
46466 TATATATATATTATAGTTTTGAAAATGATTTTTGAAA
1 AATATA-ATA-TA-ATTTTTGAAAATGATTTTT-AAA
46503 AA-ATATATATAAT
1 AATATA-ATATAAT
46516 ATATAGTTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
32 10 0.10
33 8 0.08
34 15 0.16
35 24 0.25
36 26 0.27
37 9 0.09
38 4 0.04
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.45
Consensus pattern (33 bp):
AATATAATATAATTTTTGAAAATGATTTTTAAA
Found at i:46511 original size:38 final size:37
Alignment explanation
Indices: 46377--46557 Score: 132
Period size: 38 Copynumber: 5.0 Consensus size: 37
46367 ATAGAATAAT
*
46377 TTTTGAAAATATTTTT--AAAAATATA-ATA-TATAAT
1 TTTTGAAAATATTTTTGAAAAAATATATATATTAT-AG
* *
46411 TTTTAGAAAATGATTTTTGAAAACATATA-ATA-TATTG
1 TTTT-GAAAAT-ATTTTTGAAAAAATATATATATTATAG
* * *
46448 -TTT-AAAA-ATTGTTT-TATATATATATATATTATAG
1 TTTTGAAAATATT-TTTGAAAAAATATATATATTATAG
46482 TTTTGAAAATGATTTTTGAAAAAATATATATAATATATAG
1 TTTTGAAAAT-ATTTTTGAAAAAATATATAT-AT-TATAG
* * *
46522 TTTTGAAAACA-TTTTGAATATATATATATATATATA
1 TTTTGAAAATATTTTTGAAAAAATATATATAT-TATA
46558 TATATATATA
Statistics
Matches: 120, Mismatches: 13, Indels: 25
0.76 0.08 0.16
Matches are distributed among these distances:
32 10 0.08
33 6 0.05
34 12 0.10
35 9 0.08
36 13 0.11
37 10 0.08
38 43 0.36
39 3 0.03
40 14 0.12
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.46
Consensus pattern (37 bp):
TTTTGAAAATATTTTTGAAAAAATATATATATTATAG
Found at i:46521 original size:40 final size:39
Alignment explanation
Indices: 46463--46559 Score: 133
Period size: 38 Copynumber: 2.4 Consensus size: 39
46453 AAATTGTTTT
*
46463 ATATATATATATATTATAGTTTTGAAAATGATTTTTGAAAAA
1 ATATATATATATA-TATAGTTTTGAAAA-CA-TTTTGAAAAA
* *
46505 ATATATATA-ATATATAGTTTTGAAAACATTTTGAATAT
1 ATATATATATATATATAGTTTTGAAAACATTTTGAAAAA
46543 ATATATATATATATATA
1 ATATATATATATATATA
46560 TATATATATA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
38 17 0.33
39 8 0.16
40 14 0.27
41 3 0.06
42 9 0.18
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.45
Consensus pattern (39 bp):
ATATATATATATATATAGTTTTGAAAACATTTTGAAAAA
Found at i:46546 original size:2 final size:2
Alignment explanation
Indices: 46539--46573 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
46529 AACATTTTGA
46539 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46574 GTTTTGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:46639 original size:92 final size:89
Alignment explanation
Indices: 46461--46655 Score: 235
Period size: 92 Copynumber: 2.2 Consensus size: 89
46451 AAAAATTGTT
*
46461 TTATATATATATATATTATAGTTTTGAAAATGATTTTTGAAAAAATATATATAATATATAGTTTT
1 TTATATATATATATATTATAGTTTTGAAAATGATTTTTGAAAAAATATATATAATAGATA-TTTT
46526 GAAAACATTTTGAATATATATATATA
65 GAAAACATTTTGAATATATATAT-TA
46552 TATATATATATATATATATATAGTTTTGAAAATGATTTTTG-AAAAATATAT-T-AT-GAT-TTT
1 T-TATATATATATATAT-TATAGTTTTGAAAATGATTTTTGAAAAAATATATATAATAGATATTT
* *
46612 TGAAATA-TTTTTAAATATATATAATATA
64 TGAAA-ACATTTTGAATATATAT-AT-TA
46640 TTAT-TAT-TATTATATT
1 TTATATATATA-TATATT
46656 TATTTATTTA
Statistics
Matches: 96, Mismatches: 3, Indels: 16
0.83 0.03 0.14
Matches are distributed among these distances:
85 3 0.03
86 8 0.08
87 24 0.25
88 7 0.07
89 2 0.02
90 2 0.02
91 2 0.02
92 25 0.26
93 23 0.24
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.49
Consensus pattern (89 bp):
TTATATATATATATATTATAGTTTTGAAAATGATTTTTGAAAAAATATATATAATAGATATTTTG
AAAACATTTTGAATATATATATTA
Found at i:46699 original size:17 final size:18
Alignment explanation
Indices: 46640--46699 Score: 79
Period size: 17 Copynumber: 3.4 Consensus size: 18
46630 ATATAATATA
*
46640 TTATTATTATTATATTTAT
1 TTATT-TTATTATATTTTT
*
46659 TTA-TTTATTATATGTTT
1 TTATTTTATTATATTTTT
46676 TTATTTTATTA-ATTTTT
1 TTATTTTATTATATTTTT
46693 TTATTTT
1 TTATTTT
46700 CTTTTTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 26 0.70
18 8 0.22
19 3 0.08
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTATTTTATTATATTTTT
Found at i:46966 original size:20 final size:21
Alignment explanation
Indices: 46943--46985 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
46933 ACAGTTCACT
46943 AACG-TCCCGAAATAACCGGG
1 AACGATCCCGAAATAACCGGG
* * *
46963 AACGATCCTGAGATCACCGGG
1 AACGATCCCGAAATAACCGGG
46984 AA
1 AA
46986 TGAGCCACCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.35, C:0.28, G:0.26, T:0.12
Consensus pattern (21 bp):
AACGATCCCGAAATAACCGGG
Found at i:47876 original size:51 final size:53
Alignment explanation
Indices: 47813--47927 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 53
47803 AATTTGATCC
*
47813 TTTA-TATTTTTAGCTATTCATTTTTT-TCTTTCTAATTTTAG-AT-TTTTTATA
1 TTTATTATTTTTAGCTATTC-TTTTTTCCCTTT-TAATTTTAGTATGTTTTTATA
* *
47864 -TTATTATTTTTAGTTATTCTTTTTTCCCTTTTAATTTTAGTATGTTTTTTTA
1 TTTATTATTTTTAGCTATTCTTTTTTCCCTTTTAATTTTAGTATGTTTTTATA
*
47916 TTTTTTATTTTT
1 TTTATTATTTTT
47928 TTCTAATTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
50 18 0.33
51 20 0.36
52 7 0.13
53 10 0.18
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.70
Consensus pattern (53 bp):
TTTATTATTTTTAGCTATTCTTTTTTCCCTTTTAATTTTAGTATGTTTTTATA
Found at i:47927 original size:16 final size:16
Alignment explanation
Indices: 47908--47978 Score: 63
Period size: 17 Copynumber: 4.2 Consensus size: 16
47898 TTTTAGTATG
47908 TTTTTTTATTTTTTAT
1 TTTTTTTATTTTTTAT
* *
47924 TTTTTTCTAATTATTAT
1 TTTTTT-TATTTTTTAT
*
47941 TTGTTTTATTTGTTTTACT
1 TTTTTTTA-TT-TTTTA-T
*
47960 TTTTATTA-TTTTTAT
1 TTTTTTTATTTTTTAT
47975 TTTT
1 TTTT
47979 ATTACTTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
15 5 0.11
16 13 0.30
17 15 0.34
18 4 0.09
19 7 0.16
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTTTTTATTTTTTAT
Found at i:47956 original size:28 final size:26
Alignment explanation
Indices: 47918--47970 Score: 61
Period size: 28 Copynumber: 2.0 Consensus size: 26
47908 TTTTTTTATT
*
47918 TTTTATTTTTTTCTAATTATTATTTG
1 TTTTATTTTTTACTAATTATTATTTG
**
47944 TTTTATTTGTTTTACTTTTTATTATTT
1 TTTTA-TT-TTTTACTAATTATTATTT
47971 TTATTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.23
27 2 0.09
28 15 0.68
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (26 bp):
TTTTATTTTTTACTAATTATTATTTG
Found at i:47972 original size:25 final size:24
Alignment explanation
Indices: 47908--47987 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 24
47898 TTTTAGTATG
47908 TTTTT-TTATTTTTTATTTTTTT-C
1 TTTTTATTA-TTTTTATTTTTTTAC
47931 TAATTATTATT-TGTTTTATTTGTTTTAC
1 T--TT-TTATTAT-TTTTATTT-TTTTAC
47959 TTTTTATTATTTTTATTTTTATTAC
1 TTTTTATTATTTTTATTTTT-TTAC
47984 TTTT
1 TTTT
47988 AAAATTTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 24 0.50
26 13 0.27
27 6 0.12
28 2 0.04
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.78
Consensus pattern (24 bp):
TTTTTATTATTTTTATTTTTTTAC
Found at i:53719 original size:23 final size:21
Alignment explanation
Indices: 53666--53744 Score: 81
Period size: 23 Copynumber: 3.7 Consensus size: 21
53656 TCGAAATAGA
* *
53666 GTGCATGGATGCACTACA-TG
1 GTGCATGGATGCACTGCAGGG
* *
53686 GTGCATCGATGCACTAG-TGGTAG
1 GTGCATGGATGCACT-GCAGG--G
53709 GTGCATGGATGCACTGCAGGG
1 GTGCATGGATGCACTGCAGGG
53730 GTGCATGGATGCACT
1 GTGCATGGATGCACT
53745 TTGACACCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
20 14 0.29
21 16 0.33
22 1 0.02
23 17 0.35
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.24
Consensus pattern (21 bp):
GTGCATGGATGCACTGCAGGG
Found at i:53990 original size:21 final size:21
Alignment explanation
Indices: 53966--54005 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
53956 ATGTTTAATG
53966 AAAAAGATACCAATTGTTAAC
1 AAAAAGATACCAATTGTTAAC
* *
53987 AAAATGATATCAATTGTTA
1 AAAAAGATACCAATTGTTA
54006 CCAATTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (21 bp):
AAAAAGATACCAATTGTTAAC
Found at i:55151 original size:19 final size:20
Alignment explanation
Indices: 55121--55158 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
55111 CAAAATTTCA
55121 TTTTGATTTTCAAAATCAAC
1 TTTTGATTTTCAAAATCAAC
55141 TTTTG-TTTTCAAAATCAA
1 TTTTGATTTTCAAAATCAA
55159 ATTATCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.47
Consensus pattern (20 bp):
TTTTGATTTTCAAAATCAAC
Found at i:57238 original size:21 final size:21
Alignment explanation
Indices: 57142--57241 Score: 105
Period size: 21 Copynumber: 4.7 Consensus size: 21
57132 TCAAAATGGA
* *
57142 GTGCATGGATGCACTACA-TG
1 GTGCATGGATGCACTGCAGGG
*
57162 GTGCATGGATGCACTAG-TGGCAG
1 GTGCATGGATGCACT-GCAGG--G
57185 GTGCATGGATGCACTGCAGGG
1 GTGCATGGATGCACTGCAGGG
**
57206 GTGTGTGGATGCACTGCAGGG
1 GTGCATGGATGCACTGCAGGG
*
57227 GTGCATGTATGCACT
1 GTGCATGGATGCACT
57242 TTGACACCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
20 15 0.23
21 32 0.48
22 1 0.02
23 18 0.27
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.24
Consensus pattern (21 bp):
GTGCATGGATGCACTGCAGGG
Found at i:59676 original size:85 final size:86
Alignment explanation
Indices: 59511--59679 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 86
59501 TCTCAGCCTA
* * *
59511 TTACAGTATAGCTCAAGGCGAGAAAGGGTTATCTGTCAACCAAAACCTTTGAGTTCGATTATATT
1 TTACAGCATAACTCAAGGCGAGAAAGGGTTATCTGTCAACCAAAACCTTCGAGTTCGATTATATT
* *
59576 CAGCTCAAGGGCATATCAAAT
66 CAACTCAAGGACATATCAAAT
* *
59597 TTACAGCATAACTCAAGGCGAG-AAGGGTTATCTGTCAA-CACAAA-CTGTCGAGTTTGATTCTA
1 TTACAGCATAACTCAAGGCGAGAAAGGGTTATCTGTCAACCA-AAACCT-TCGAGTTCGATTATA
** *
59659 TTCAACTTGATGACATATCAA
64 TTCAACTCAAGGACATATCAA
59680 CCGCATGGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
84 4 0.06
85 47 0.66
86 20 0.28
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (86 bp):
TTACAGCATAACTCAAGGCGAGAAAGGGTTATCTGTCAACCAAAACCTTCGAGTTCGATTATATT
CAACTCAAGGACATATCAAAT
Found at i:62134 original size:51 final size:50
Alignment explanation
Indices: 62095--62197 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
62085 ATTTAACATT
*
62095 TTTTATTTTTTT-ATTTTGTT-TTTCCCTTTAATTTATTTAATATTTTTTA
1 TTTTATTTTTTTAATTTT-TTCTTTCCCTTTAATTTATTTAATATTTATTA
* * *
62144 TTTTATTTTTTTAATTTTTTCTTTTCCTTTAATATT-TTTTATTTTTATT-
1 TTTTATTTTTTTAATTTTTTCTTTCCCTTTAAT-TTATTTAATATTTATTA
62193 TTTTA
1 TTTTA
62198 AAATTTTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
49 19 0.40
50 26 0.55
51 2 0.04
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (50 bp):
TTTTATTTTTTTAATTTTTTCTTTCCCTTTAATTTATTTAATATTTATTA
Found at i:62140 original size:44 final size:43
Alignment explanation
Indices: 62084--62227 Score: 152
Period size: 41 Copynumber: 3.3 Consensus size: 43
62074 TTACTTTTAA
* *
62084 TATTTAACATTTTTTATTTTTTTATTTT-GTTTTTCCCTTTAATT
1 TATTTAATATTTTTTATTTTTTT-TTTTAATTTTTCCCTTT-ATT
*
62128 TATTTAATATTTTTTATTTTATTTTTTTAATTTTT-TC-TT-TT
1 TATTTAATATTTTTTATTTT-TTTTTTTAATTTTTCCCTTTATT
**
62169 CCTTTAATATTTTTTATTTTTATTTTTTAAAATTTTTCCCTTTGATT
1 TATTTAATATTTTTTATTTTT-TTTTTT--AATTTTTCCCTTT-ATT
62216 TATTTAATATTT
1 TATTTAATATTT
62228 ATTTCTTATT
Statistics
Matches: 83, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
40 1 0.01
41 26 0.31
43 9 0.11
44 25 0.30
45 10 0.12
47 12 0.14
ACGTcount: A:0.21, C:0.07, G:0.01, T:0.71
Consensus pattern (43 bp):
TATTTAATATTTTTTATTTTTTTTTTTAATTTTTCCCTTTATT
Found at i:62325 original size:13 final size:13
Alignment explanation
Indices: 62307--62336 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
62297 TGAATCGAGT
62307 TTTTAAATTTTAA
1 TTTTAAATTTTAA
62320 TTTTAAATTTTAA
1 TTTTAAATTTTAA
62333 TTTT
1 TTTT
62337 CTCAATTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTAAATTTTAA
Found at i:63655 original size:19 final size:18
Alignment explanation
Indices: 63633--63681 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
63623 GTGTTTGTTA
*
63633 TGATTATATGTGCTATAT
1 TGATTATATGTACTATAT
*
63651 GTGATTATATGTATTATAT
1 -TGATTATATGTACTATAT
*
63670 TAATTATATGTA
1 TGATTATATGTA
63682 TGCATGACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (18 bp):
TGATTATATGTACTATAT
Found at i:63666 original size:9 final size:9
Alignment explanation
Indices: 63631--63682 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
63621 ATGTGTTTGT
63631 TATG-ATTA
1 TATGTATTA
**
63639 TATGTGCTA
1 TATGTATTA
63648 TATGTGATTA
1 TATGT-ATTA
63658 TATGTATTA
1 TATGTATTA
63667 TAT-TAATTA
1 TATGT-ATTA
63676 TATGTAT
1 TATGTAT
63683 GCATGACTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
8 5 0.14
9 23 0.64
10 8 0.22
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (9 bp):
TATGTATTA
Done.