genome.fa.s997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000997.1 Hibiscus syriacus cultivar Beakdansim tig00001997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96913

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1325--1351	2	13.5	2	100	0	54	51	0	0	48	1.00
1345--1385	21	1.9	22	85	5	57	43	4	12	39	1.63
1576--1682	32	3.4	32	79	5	128	28	18	19	33	1.96
2371--2430	20	3.1	19	83	7	75	36	15	10	38	1.80
2382--2432	20	2.6	20	87	3	77	37	11	7	43	1.71
7399--7436	20	1.9	20	94	0	67	28	21	15	34	1.94
7429--7478	19	2.6	19	87	0	64	40	14	6	40	1.70
8888--8927	20	1.9	22	85	10	57	40	0	2	57	1.12
11445--11489	16	2.6	17	77	22	58	33	0	2	64	1.06
11773--11824	23	2.3	23	93	0	86	46	11	5	36	1.64
12684--12731	19	2.7	18	81	12	55	27	2	4	66	1.21
12693--12731	19	2.1	19	90	0	60	25	2	5	66	1.25
16313--16342	16	1.9	15	93	6	51	66	3	3	26	1.23
23163--23242	21	3.7	22	77	8	67	25	30	23	21	1.99
26558--26668	10	10.1	10	70	18	69	10	9	18	61	1.55
26558--26668	23	4.9	23	78	10	104	10	9	18	61	1.55
26619--26668	20	2.5	20	96	0	91	8	14	22	56	1.64
26675--26755	31	2.6	31	92	0	126	48	13	13	24	1.79
26764--26812	16	3.1	16	100	0	98	6	12	24	57	1.58
37692--37731	16	2.6	16	88	4	55	42	12	15	30	1.83
37783--38091	27	11.4	27	96	0	510	22	20	24	32	1.98
38340--38399	2	30.0	2	96	0	111	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42155--42209	19	2.9	19	94	5	94	12	27	36	23	1.91
43161--43316	31	5.0	31	89	1	233	21	18	21	38	1.93
43797--43839	21	2.0	21	82	8	52	32	4	13	48	1.63
44143--44185	2	22.0	2	88	4	61	46	0	2	51	1.13
46328--46362	18	1.9	18	88	11	54	14	28	34	22	1.93
47314--47562	31	8.0	31	94	0	428	20	18	22	38	1.93
48044--48086	21	2.0	21	82	8	52	32	4	13	48	1.63
48221--48275	18	3.2	17	87	10	76	27	0	0	72	0.85
48340--48394	18	3.2	17	82	10	67	30	0	0	69	0.89
48351--48394	15	2.9	16	83	10	56	34	0	0	65	0.93
48372--48410	13	2.9	13	84	3	51	30	2	0	66	1.05
48209--48446	119	2.0	119	96	0	442	32	3	9	54	1.49
51732--51790	20	2.9	19	75	9	55	55	16	0	27	1.41
51787--51837	18	2.8	19	85	8	72	49	27	0	23	1.51
52195--52226	2	16.0	2	100	0	64	50	50	0	0	1.00
52226--52263	2	19.0	2	100	0	76	50	0	0	50	1.00
53275--53400	20	6.3	20	78	12	134	42	23	15	19	1.89
53275--53463	40	4.8	38	77	14	145	41	22	13	22	1.89
53263--53383	60	2.0	60	95	0	215	40	23	15	19	1.90
53309--53466	19	8.1	20	80	10	148	40	20	12	25	1.88
54414--54467	24	2.2	24	90	0	81	22	18	18	40	1.91
57096--57125	14	2.1	14	93	0	51	53	23	16	6	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57173--57229	20	2.8	20	84	10	71	17	19	19	43	1.88
57284--57333	24	2.0	25	88	3	75	34	8	18	40	1.79
57720--57756	18	2.1	18	89	0	56	32	5	10	51	1.60
57712--57764	24	2.2	24	86	0	70	35	3	13	47	1.61
59071--59116	20	2.3	20	88	0	65	39	21	19	19	1.93
59078--59117	20	2.0	20	95	0	71	40	22	15	22	1.91
59140--59185	20	2.3	20	96	0	83	19	17	21	41	1.90
59238--59381	66	2.2	64	90	4	227	50	17	2	30	1.58
60709--60802	21	4.5	21	72	5	73	20	21	36	22	1.95
60709--60827	42	2.8	42	81	7	134	22	20	34	22	1.97
60729--60827	21	4.7	21	74	8	85	23	20	33	23	1.97
63029--63076	14	3.4	14	85	0	60	8	12	27	52	1.67
63063--63102	20	2.0	20	85	0	53	15	12	22	50	1.77
63568--63632	26	2.5	26	89	0	103	23	9	23	44	1.81
63623--63732	20	5.4	20	80	1	103	19	14	26	40	1.90
63625--63732	40	2.7	40	80	7	128	19	13	25	40	1.89
63702--63803	40	2.5	40	80	9	111	23	16	20	39	1.92
63724--63810	20	4.3	20	86	0	111	22	17	22	36	1.94
64169--64212	11	3.7	11	77	16	52	65	4	2	27	1.23
65166--65228	30	2.1	30	87	0	90	52	9	28	9	1.65
69048--69169	36	3.4	36	78	8	133	39	20	18	21	1.93
73205--73264	20	3.0	20	78	11	61	50	1	6	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73209--73254	18	2.4	20	85	7	60	50	2	2	45	1.26
73209--73264	18	2.8	19	79	15	53	51	1	5	41	1.35
79654--79795	63	2.2	64	96	3	261	26	6	11	55	1.59
79654--79811	63	2.5	63	90	5	212	26	6	12	55	1.60
84494--84554	30	2.0	30	83	0	77	47	18	3	31	1.64
91578--91699	7	17.1	7	77	14	117	81	0	16	2	0.80
91579--91677	15	6.9	14	78	19	82	80	0	16	3	0.83
91579--91708	28	4.6	29	84	8	160	80	0	16	3	0.86
92658--92921	134	2.0	134	85	1	359	27	32	17	21	1.96
93146--93191	3	15.0	3	81	4	56	28	4	0	67	1.10

Tables:   1

The End!