Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000998.1 Hibiscus syriacus cultivar Beakdansim tig00001998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86064

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2063--2088
11
2.4
11
100
0
52
61
0
0
38
0.96
3475--3532
3
19.3
3
84
13
75
63
0
0
36
0.94
3674--3943
118
2.3
116
86
6
364
23
19
16
40
1.91
3876--4358
109
4.4
113
83
8
601
28
18
14
37
1.91
3920--4356
221
2.0
220
96
3
808
29
18
14
37
1.90
5006--5343
114
3.0
114
94
0
568
30
18
15
35
1.92
5637--5708
19
3.7
19
76
12
67
52
4
11
31
1.56
6038--6118
10
8.4
10
71
22
66
1
17
0
81
0.76
6038--6120
35
2.4
36
84
11
111
2
18
0
79
0.84
6065--6114
22
2.2
22
89
3
73
2
16
0
82
0.77
17448--17504
22
2.7
21
78
13
55
59
0
1
38
1.08
18892--18927
18
2.0
18
94
0
63
8
16
36
38
1.79
18987--19047
3
20.7
3
86
9
54
59
0
0
40
0.98
20537--20622
28
3.1
28
80
9
79
60
0
2
37
1.10
20587--20653
22
3.0
22
66
25
52
49
0
4
46
1.22
20573--20622
25
1.9
27
88
8
77
54
0
4
42
1.19
36028--36118
32
3.1
28
76
13
101
57
0
1
41
1.06
42734--42760
14
1.9
14
100
0
54
18
14
14
51
1.76
42739--42807
24
2.9
24
84
0
102
14
10
17
57
1.63
43404--43464
16
3.8
16
91
0
95
9
9
21
59
1.58
43538--43570
16
2.1
16
94
0
57
6
15
21
57
1.59
43838--43914
37
2.1
37
95
0
136
24
29
9
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43947--43971
11
2.3
11
100
0
50
0
8
0
92
0.40
63355--63399
23
2.0
23
86
0
63
44
13
0
42
1.43
68186--68406
45
4.9
45
93
0
372
31
23
7
37
1.82
68529--68644
61
1.9
61
90
0
187
32
26
15
25
1.95
74598--74623
2
13.0
2
100
0
52
50
0
0
50
1.00
74866--74890
13
1.9
13
100
0
50
16
4
16
64
1.44
77039--77080
21
1.9
23
85
9
61
11
4
7
76
1.15
77048--77098
25
2.0
26
85
11
70
9
1
9
78
1.04
77155--77258
6
17.5
6
78
13
83
17
2
0
78
0.92
77106--77286
56
3.5
53
73
19
141
23
3
0
72
1.05
77157--77368
21
10.1
20
70
19
125
20
5
0
74
1.05
77196--77269
4
18.5
4
74
20
50
18
1
1
78
0.90
77300--77387
10
8.3
10
75
17
56
14
7
1
76
1.07
77440--77490
5
10.6
5
76
16
54
19
0
1
78
0.85
79573--79622
16
3.2
16
83
13
61
46
0
4
50
1.20
79587--79623
2
19.5
2
83
10
51
45
0
2
51
1.15
80619--80652
15
2.2
15
89
5
50
17
0
2
79
0.86
80813--80866
27
2.0
28
85
3
74
9
1
7
81
0.94
80914--81127
6
34.8
6
69
17
86
18
5
0
75
1.02
80916--81141
16
14.3
15
71
18
117
18
6
0
74
1.05
80915--81219
5
59.8
5
69
20
120
16
7
0
74
1.09
80897--81141
62
4.1
57
74
15
180
17
6
0
75
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80916--81210
36
7.9
36
71
21
180
16
7
1
74
1.10
81125--81178
23
2.3
23
81
6
65
9
14
3
72
1.24
83027--83060
2
18.0
2
88
11
54
52
0
0
47
1.00
84660--84973
154
2.0
154
90
0
493
41
14
14
29
1.85

Tables:   1

The End!