genome.fa.s999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000999.1 Hibiscus syriacus cultivar Beakdansim tig00001999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59672

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249--421	82	2.1	82	86	4	233	24	0	26	48	1.51
4159--4212	17	3.2	17	97	0	99	25	16	29	27	1.97
4193--4285	34	2.7	35	81	3	107	25	21	24	27	1.99
12436--12497	1	62.0	1	77	0	61	88	6	3	1	0.66
12436--12497	15	4.1	14	82	13	70	88	6	3	1	0.66
12427--12497	27	2.7	26	82	8	81	85	7	4	2	0.80
13785--14345	51	10.8	51	81	8	582	31	17	26	23	1.97
13813--14307	210	2.4	206	93	2	828	31	18	27	22	1.97
13785--14309	156	3.4	156	85	5	656	32	17	26	23	1.97
14302--14416	55	2.1	55	91	0	185	32	13	26	27	1.94
14316--14436	55	2.2	55	86	0	161	32	15	22	29	1.95
14693--14746	2	27.0	2	100	0	108	50	0	0	50	1.00
15394--15419	13	2.0	13	100	0	52	76	15	7	0	0.99
17567--17631	32	2.0	32	96	0	121	33	10	12	43	1.77
18344--18419	33	2.3	33	90	2	118	30	9	36	23	1.86
18376--18702	45	7.3	45	78	8	258	35	14	32	18	1.91
18406--18702	135	2.2	135	80	5	325	35	15	31	17	1.91
18375--18704	180	1.8	180	86	3	486	35	14	31	18	1.91
19646--19684	19	2.1	19	95	4	71	43	5	10	41	1.61
22848--23171	45	7.3	45	74	11	229	29	9	36	24	1.87
22738--23240	176	2.8	177	82	3	607	30	9	36	23	1.87
23159--23327	87	1.9	87	80	4	198	31	8	34	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24715--24834	35	3.3	36	86	6	163	43	20	5	31	1.73
29342--29461	35	3.3	36	86	6	163	44	18	5	32	1.71
34093--34144	19	2.6	20	84	6	70	44	3	13	38	1.62
37320--37346	5	5.4	5	100	0	54	0	18	0	81	0.69
37375--37406	9	3.6	9	100	0	64	0	9	0	90	0.45
40128--40185	22	2.6	22	83	0	80	37	12	20	29	1.89
40784--40936	32	4.8	32	84	4	186	35	21	15	27	1.93
45916--45960	21	2.1	21	87	0	63	31	15	6	46	1.72
53424--53479	6	9.3	6	90	0	85	17	12	14	55	1.69
58378--58402	13	1.9	13	100	0	50	32	24	20	24	1.98
58392--58656	42	6.2	40	70	17	162	29	20	20	30	1.97
58215--58620	132	3.1	132	89	3	586	30	17	20	30	1.96
58509--58533	13	1.9	13	100	0	50	36	24	16	24	1.94
59160--59672	53	9.8	53	83	4	596	31	18	27	22	1.97
59160--59670	105	4.9	106	83	6	596	31	18	27	22	1.97

Tables:   1

The End!