Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000010.1 Kokia drynarioides strain JFW-HI SEQ_14606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.38


Found at i:622 original size:17 final size:18

Alignment explanation


    Indices: 590--625  Score: 65
    Period size: 17  Copynumber: 2.1  Consensus size: 18

        580 TGCATAGGAA

                              
        590 TTTAACTTAGATTTAATT
          1 TTTAACTTAGATTTAATT

                              
        608 TTTAACTTA-ATTTAATT
          1 TTTAACTTAGATTTAATT

             
        625 T
          1 T

        626 AGTTTAGAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    9  0.50
  18    9  0.50

ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58


Consensus pattern (18 bp):   
TTTAACTTAGATTTAATT
Done.