genome.fa.s10010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010010.1 Kokia drynarioides strain JFW-HI SEQ_124771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162641

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597--714	59	2.0	59	96	0	218	33	0	11	55	1.41
617--723	30	3.6	30	69	16	96	33	0	7	57	1.33
915--991	37	2.1	37	100	0	154	32	23	15	28	1.95
1347--1420	4	18.2	4	83	8	96	0	32	0	67	0.91
1351--1421	25	2.8	26	83	10	94	0	33	0	66	0.92
4355--4404	25	1.9	26	84	8	66	46	0	0	54	1.00
4368--4444	30	2.6	28	75	13	75	42	1	1	54	1.16
4974--5027	26	2.3	23	81	15	65	22	57	1	18	1.50
4981--5033	26	2.0	26	96	0	97	20	58	1	18	1.49
13148--13203	24	2.3	24	96	0	103	7	19	5	67	1.34
16166--16221	24	2.3	24	96	0	103	7	19	5	67	1.34
25708--25746	20	2.0	20	85	10	53	12	17	0	69	1.19
26706--26829	12	10.8	12	82	8	107	71	9	0	17	1.17
26727--26836	18	6.3	18	77	13	113	71	9	1	17	1.20
26703--26810	23	4.8	22	74	10	76	73	8	0	17	1.13
26826--26891	7	9.7	7	84	15	86	75	0	12	12	1.04
26839--26891	16	3.1	16	85	15	79	77	0	11	11	1.00
26728--26878	74	2.1	73	81	7	173	72	6	4	15	1.22
26703--26876	80	2.2	79	80	10	192	72	6	4	16	1.22
26826--26902	19	4.2	19	83	9	97	72	0	14	12	1.12
26706--26891	6	30.7	6	79	11	89	72	6	4	16	1.23
26839--26908	35	2.0	34	86	13	97	74	0	12	12	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33428--33473	24	1.9	23	86	8	65	56	6	4	32	1.45
34020--34175	80	2.0	80	87	5	226	23	23	24	29	1.99
38262--38624	180	2.0	181	90	2	577	29	23	14	32	1.94
47899--48125	48	4.8	48	90	2	332	23	10	14	51	1.73
47899--48125	95	2.4	95	87	3	330	23	10	14	51	1.73
53223--53339	56	2.1	56	95	0	207	22	13	24	39	1.90
57789--58971	590	2.0	591	97	0	2224	32	16	17	32	1.93
60459--60551	37	2.5	37	89	0	159	31	26	15	26	1.95
66417--66463	17	2.8	17	87	3	60	48	17	14	19	1.81
75473--75572	36	2.8	35	81	6	119	39	17	24	20	1.92
77841--77922	40	2.0	40	90	0	128	28	29	18	24	1.98
77851--77956	40	2.7	40	83	0	131	31	29	15	24	1.95
80328--80367	21	2.0	20	85	5	53	45	2	15	37	1.59
81223--81397	51	3.4	50	91	1	260	29	12	24	33	1.92
83234--83267	16	2.2	16	89	5	52	70	2	11	14	1.27
83332--83590	29	8.9	29	77	12	185	37	2	25	34	1.69
83366--83596	87	2.6	87	78	9	220	38	2	25	34	1.68
84996--85041	17	2.7	17	86	0	56	63	6	0	30	1.20
85437--86176	39	18.9	39	71	6	381	25	20	30	23	1.99
85612--86176	78	7.2	78	84	1	657	25	20	30	23	1.98
97620--97800	97	1.9	97	90	0	290	38	16	18	26	1.92
98120--98387	28	9.3	27	73	13	117	33	2	26	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98193--98398	57	3.6	56	82	5	189	33	2	24	39	1.68
98221--98381	85	1.9	85	87	5	236	31	3	25	39	1.71
98060--98464	29	14.0	28	73	11	187	35	2	24	37	1.70
98327--98464	28	4.8	29	74	13	115	42	1	18	38	1.59
98242--98425	57	3.2	57	80	7	151	36	1	21	40	1.63
99931--99981	16	3.2	16	81	8	68	60	0	0	39	0.97
99955--99986	11	2.9	11	100	0	64	62	0	0	37	0.95
99946--100004	28	2.1	28	83	0	73	59	5	0	35	1.20
105846--106080	51	4.6	51	87	2	310	30	13	24	31	1.94
107437--107813	48	7.8	48	86	3	506	24	8	13	52	1.68
120703--121039	141	2.4	137	86	2	433	28	12	19	40	1.87
129278--129309	12	2.7	12	90	0	55	43	12	0	43	1.42
129300--129336	15	2.2	18	86	13	53	54	5	5	35	1.47
129687--129711	13	1.9	13	100	0	50	40	32	8	20	1.81
130319--130421	51	2.0	51	100	0	206	19	9	21	49	1.76
132430--132521	24	3.8	24	89	0	130	26	14	5	54	1.61
137796--137846	25	2.0	25	84	0	66	35	27	17	19	1.94
137803--137857	25	2.2	25	90	0	83	32	27	16	23	1.96
140191--140242	20	2.6	20	87	0	68	42	17	28	11	1.84
140194--140251	20	2.9	20	81	0	62	41	17	32	8	1.80
142508--142557	24	2.1	24	96	3	93	24	12	8	56	1.62
142508--142567	23	2.5	24	89	2	77	26	13	10	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143376--143490	57	2.0	57	96	0	212	26	21	13	39	1.90
146698--146762	22	3.1	21	78	8	71	47	0	0	52	1.00
146717--146759	15	2.6	16	78	14	52	44	0	0	55	0.99
147349--147395	24	2.0	24	82	0	58	19	25	0	55	1.43
147438--147501	28	2.3	29	86	8	96	31	0	1	67	1.00
147441--147486	22	2.0	23	95	4	85	30	0	0	69	0.89
147449--147506	28	2.1	28	96	0	107	27	0	1	70	0.97
148671--148842	42	4.1	42	86	1	220	39	10	24	25	1.87
153047--153092	18	2.6	18	96	0	83	23	17	17	41	1.90
155598--155828	42	5.5	42	79	8	238	37	11	25	25	1.89
160194--160288	21	4.6	21	73	12	81	49	21	0	29	1.50

Tables:   1

The End!