Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010017.1 Kokia drynarioides strain JFW-HI SEQ_124780, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7737
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.32


Found at i:3350 original size:92 final size:92

Alignment explanation


    Indices: 3243--3427  Score: 361
    Period size: 92  Copynumber: 2.0  Consensus size: 92

       3233 TAGGTCACAA

                                 *                                           
       3243 CATAAGGAGAATATGGAGATGGACCTTAACAATAGTAATAATTATTCAATATTAATGCTAGGGAT
          1 CATAAGGAGAATATGGAGATGAACCTTAACAATAGTAATAATTATTCAATATTAATGCTAGGGAT

                                       
       3308 GAGGTCAGATGAGGATAGTGAGTTGGC
         66 GAGGTCAGATGAGGATAGTGAGTTGGC

                                                                             
       3335 CATAAGGAGAATATGGAGATGAACCTTAACAATAGTAATAATTATTCAATATTAATGCTAGGGAT
          1 CATAAGGAGAATATGGAGATGAACCTTAACAATAGTAATAATTATTCAATATTAATGCTAGGGAT

                                       
       3400 GAGGTCAGATGAGGATAGTGAGTTGGC
         66 GAGGTCAGATGAGGATAGTGAGTTGGC

             
       3427 C
          1 C

       3428 GAAGTAGAGA


Statistics
Matches: 92,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  92   92  1.00

ACGTcount: A:0.37, C:0.09, G:0.26, T:0.27


Consensus pattern (92 bp):   
CATAAGGAGAATATGGAGATGAACCTTAACAATAGTAATAATTATTCAATATTAATGCTAGGGAT
GAGGTCAGATGAGGATAGTGAGTTGGC
Done.