genome.fa.s10021.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010021.1 Kokia drynarioides strain JFW-HI SEQ_124786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  355209

Tables:   1   2   

This is table  1  of  2  ( 126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4800--4842	16	2.4	19	88	11	65	2	20	0	76	0.89
15345--15392	19	2.5	20	75	21	50	45	0	0	54	0.99
16991--17061	18	4.0	17	73	21	65	47	7	28	16	1.73
19979--20062	28	3.0	27	86	6	114	30	15	28	25	1.96
21653--21698	17	2.6	18	83	16	60	78	2	17	2	0.96
29444--29618	29	6.0	29	75	9	160	37	3	25	34	1.73
29444--29619	59	3.0	58	83	5	230	37	3	25	34	1.73
29456--29645	59	3.3	57	81	5	213	38	2	22	36	1.68
31318--31393	17	4.4	17	89	3	116	55	1	2	40	1.22
31318--31393	6	13.0	6	71	15	61	55	1	2	40	1.22
31793--32588	117	6.9	115	75	10	599	25	19	30	24	1.98
32022--32393	184	2.0	185	86	2	514	25	19	29	24	1.99
32214--32643	78	5.6	78	82	2	460	25	20	30	24	1.99
31793--32630	39	21.8	38	71	7	365	25	19	30	24	1.98
46207--46399	97	2.0	96	81	9	223	43	12	13	29	1.82
46491--46520	14	2.1	14	93	0	51	70	3	6	20	1.25
46663--46954	30	9.9	28	74	12	167	38	3	24	33	1.73
46687--46908	58	3.8	59	84	4	256	36	4	24	34	1.75
47985--48034	18	2.7	19	87	6	68	42	0	0	58	0.98
48572--48652	6	14.0	6	71	17	55	54	3	2	39	1.32
48572--48625	23	2.3	23	87	0	72	51	3	3	40	1.37
61425--61461	17	2.1	18	90	5	58	24	5	8	62	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62718--62799	31	2.5	31	76	11	85	57	0	3	39	1.16
63027--63052	3	8.7	3	100	0	52	65	0	0	34	0.93
72417--72484	6	10.7	6	77	13	57	76	4	2	16	1.07
72417--72488	14	5.1	14	74	19	60	76	5	2	15	1.09
72451--72488	7	5.4	7	87	9	51	76	7	2	13	1.11
76240--76274	12	2.9	12	86	0	52	71	0	0	28	0.86
84064--84193	29	4.4	29	78	5	127	46	20	6	26	1.73
85033--85165	45	3.0	45	90	0	212	31	6	20	42	1.76
85360--85408	23	2.2	23	81	3	55	36	2	2	59	1.21
85492--85527	19	1.9	19	94	5	65	52	16	11	19	1.73
91103--91499	45	9.4	44	71	17	225	35	5	18	41	1.74
91148--91294	76	1.9	76	94	0	258	34	5	18	41	1.73
91103--91339	121	2.0	121	90	1	377	34	6	17	41	1.76
91225--91527	90	3.5	89	77	10	317	35	4	17	42	1.70
91405--91473	33	2.1	33	94	0	120	39	0	14	46	1.45
91488--91548	29	2.1	29	87	0	86	37	1	16	44	1.58
91365--91603	74	3.1	74	86	3	307	37	3	15	43	1.64
91517--91658	45	3.2	45	85	0	194	36	4	15	42	1.69
91275--91631	123	3.0	119	75	6	358	35	3	16	43	1.67
92542--92579	3	12.7	3	100	0	76	34	0	0	65	0.93
94590--94640	21	2.4	21	83	0	57	25	23	33	17	1.96
99290--99333	17	2.5	17	85	7	52	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99606--99652	17	2.5	19	80	16	53	36	0	2	61	1.08
99607--99652	18	2.4	20	75	7	51	36	0	2	60	1.09
101680--101722	13	3.2	13	76	3	50	62	2	0	34	1.08
103168--103202	18	1.9	18	94	0	61	31	2	0	65	1.07
103177--103258	39	2.2	37	85	12	105	42	2	2	52	1.27
103206--103261	18	2.9	19	78	7	60	48	1	3	46	1.30
103763--103797	16	2.2	16	89	0	52	48	2	2	45	1.32
103972--104014	11	3.7	11	81	9	50	55	0	4	39	1.20
104391--104468	31	2.5	31	77	4	77	23	8	12	55	1.65
109739--109837	45	2.2	45	83	3	128	29	30	16	24	1.96
117027--117071	23	2.0	23	90	0	72	24	22	22	31	1.99
117028--117079	23	2.3	23	86	0	68	25	19	23	32	1.97
119037--119086	14	3.6	14	81	2	57	36	24	20	20	1.95
119983--120011	2	14.5	2	100	0	58	48	0	0	51	1.00
122917--122963	21	2.2	21	80	0	58	46	12	17	23	1.82
129510--129540	7	4.4	7	100	0	62	29	29	16	25	1.96
129511--129558	19	2.4	19	82	6	51	31	27	14	27	1.95
129515--129568	26	2.1	26	82	0	63	29	22	14	33	1.94
129554--129591	20	1.9	20	88	0	58	18	7	18	55	1.66
132402--132464	31	2.0	31	100	0	126	63	9	17	9	1.50
144910--144934	12	2.1	12	100	0	50	40	8	0	52	1.31
147792--147942	72	2.1	72	82	2	187	28	17	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161674--161715	16	2.5	17	76	3	50	7	26	0	66	1.17
161741--161783	23	1.9	22	85	4	59	46	25	0	27	1.53
162215--162277	30	2.1	31	82	5	76	39	6	6	47	1.54
170393--170648	128	2.0	128	98	0	494	20	21	16	41	1.90
171947--172194	57	4.4	57	85	4	329	30	25	18	24	1.98
171975--172179	29	7.2	29	65	23	103	31	25	18	24	1.98
176464--176750	57	5.0	57	85	0	367	30	25	18	26	1.98
176417--176735	171	1.9	170	85	0	449	30	25	18	26	1.98
181239--182855	209	7.8	209	87	2	2036	24	21	16	37	1.93
182103--182262	85	1.9	85	84	0	212	25	23	15	36	1.94
182853--183015	39	4.2	39	84	3	202	26	18	30	25	1.98
183274--183399	50	2.5	50	75	13	134	18	31	14	35	1.90
184363--184432	14	5.2	13	74	6	52	4	11	1	82	0.86
194722--194799	35	2.2	35	81	4	86	39	15	15	29	1.88
210111--210169	27	2.1	27	81	12	66	30	15	23	30	1.95
210207--210283	28	2.8	28	82	11	79	24	11	29	33	1.91
210965--211007	20	2.2	20	86	0	59	34	13	4	46	1.65
220260--220397	67	2.1	67	91	0	222	43	11	10	34	1.76
224046--224080	5	7.2	5	90	6	54	77	0	0	22	0.78
224043--224077	14	2.6	14	90	4	54	77	0	0	22	0.78
231295--231344	24	2.1	24	85	7	66	6	36	4	54	1.44
248639--248671	18	1.9	18	88	11	52	51	9	0	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249355--249395	21	2.0	21	100	0	82	14	0	41	43	1.45
250114--250143	16	1.9	16	93	6	53	23	0	0	76	0.78
253215--253262	3	16.3	3	89	4	53	0	35	6	58	1.23
254240--254315	24	3.2	23	75	5	71	46	0	3	50	1.20
254424--254459	13	2.8	14	88	12	51	47	0	13	38	1.44
254939--254994	29	1.9	30	89	7	89	58	3	0	37	1.15
263313--263351	19	2.1	18	85	4	51	35	2	2	58	1.25
264253--264742	248	2.0	247	93	0	829	40	16	21	21	1.91
269144--269182	19	2.1	19	86	13	55	38	2	2	56	1.27
274445--274478	17	2.1	16	89	10	52	70	2	0	26	1.01
275696--275723	11	2.5	11	100	0	56	25	21	17	35	1.95
275803--275843	21	2.0	21	85	9	57	60	2	0	36	1.10
277125--277174	21	2.3	23	82	6	68	44	0	2	54	1.11
278922--278976	25	2.2	25	83	6	67	60	0	5	34	1.20
279036--280138	97	11.4	97	88	2	1501	44	12	9	33	1.73
279036--280203	389	3.0	387	88	4	1676	44	11	9	34	1.73
279036--280138	292	3.8	290	87	4	1557	44	12	9	33	1.73
281740--281818	29	2.6	30	84	7	99	26	12	13	46	1.79
282068--282127	26	2.3	27	82	5	79	35	6	5	53	1.49
283097--283139	18	2.4	18	92	7	70	44	0	0	55	0.99
290456--290493	19	2.0	20	89	5	60	39	0	7	52	1.31
291345--291373	12	2.3	13	94	5	51	34	3	10	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307925--307978	27	2.0	27	100	0	108	40	18	18	22	1.91
309734--309809	28	2.8	28	82	7	86	48	2	1	47	1.24
309756--309809	13	3.9	14	79	11	58	44	1	0	53	1.11
310108--310147	21	1.9	21	89	0	62	42	17	5	35	1.71
312038--312078	20	2.1	20	86	4	57	46	2	0	51	1.14
312887--312956	29	2.4	29	85	4	88	31	4	1	62	1.23
314565--314620	29	2.0	28	89	3	85	55	3	1	39	1.28
315806--315904	52	1.9	51	87	8	146	42	3	5	49	1.40
317479--317673	63	3.1	63	76	2	151	35	31	7	25	1.83
323943--324076	66	2.0	66	97	0	250	30	5	26	36	1.81

Tables:   1   2