Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010025.1 Kokia drynarioides strain JFW-HI SEQ_124790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2266
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29

Warning! 7 characters in sequence are not A, C, G, or T


Found at i:327 original size:45 final size:45

Alignment explanation


    Indices: 254--390  Score: 166
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        244 GCATAGCTCA

                             * *                         
        254 TCAAGCCAAGGATATAAACTTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATAAGCCTCAGTTTGACGAGCCACCGCAATAC

                           *       *      *              
        299 TCAAGCCAAGGATATCAGCCTCAATTTGACAAGCCACCGCAATAC
          1 TCAAGCCAAGGATATAAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **        *  *  *              *   *    
        344 TCAAGGGAAGGATATTAGGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATAAGCCTCAGTTTGACGAGCCACCGCAATAC

              
        389 TC
          1 TC

        391 TATTCCTCCC


Statistics
Matches: 78,  Mismatches: 14, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  45   78  1.00

ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATAAGCCTCAGTTTGACGAGCCACCGCAATAC

Found at i:411 original size:21 final size:21

Alignment explanation


    Indices: 385--427  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        375 AGCCATCGCG

                    *            
        385 ATACTCTATTCCTCCCGGGCA
          1 ATACTCTACTCCTCCCGGGCA

                           *     
        406 ATACTCTACTCCTCCGGGGCA
          1 ATACTCTACTCCTCCCGGGCA

             
        427 A
          1 A

        428 ATGGACCCTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.21, C:0.37, G:0.16, T:0.26


Consensus pattern (21 bp):   
ATACTCTACTCCTCCCGGGCA
Done.