Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010033.1 Kokia drynarioides strain JFW-HI SEQ_124801, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 987

Length: 1646
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28


Found at i:1084 original size:3 final size:3

Alignment explanation


    Indices: 1076--1123  Score: 60
    Period size: 3  Copynumber: 16.0  Consensus size: 3

       1066 TAAGTTTAAC

                                    *                 *  *           *     
       1076 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAC AGT AAT AAT ATT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

       1124 CATTAAACCA


Statistics
Matches: 37,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33


Consensus pattern (3 bp):   
AAT

Done.