genome.fa.s10040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010040.1 Kokia drynarioides strain JFW-HI SEQ_124808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95481

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2286--2608	30	11.0	29	77	11	318	31	2	30	34	1.72
2299--2608	59	5.3	59	82	7	362	31	2	29	35	1.72
4393--4453	11	5.5	11	74	16	54	54	1	1	42	1.20
4380--4453	17	4.4	17	81	5	87	51	1	2	44	1.24
4380--4453	6	13.0	6	72	16	59	51	1	2	44	1.24
7893--7937	21	2.1	22	84	8	58	48	0	2	48	1.13
10566--10640	24	3.1	24	92	3	116	58	8	9	24	1.56
11015--11067	27	2.0	26	82	10	63	67	1	20	9	1.28
14920--15048	36	3.7	36	71	12	117	44	2	3	50	1.30
14911--15058	69	2.2	69	88	5	207	43	2	2	50	1.30
16451--16491	21	2.0	21	90	0	64	14	17	31	36	1.90
20404--20472	28	2.5	28	77	17	72	62	1	0	36	1.04
30902--31275	62	6.1	62	78	7	372	36	16	18	28	1.93
30902--31306	121	3.3	120	82	8	428	35	15	19	29	1.93
30902--31275	61	6.1	62	78	8	356	36	16	18	28	1.93
30902--31310	60	6.7	58	76	8	311	35	16	19	28	1.93
32082--32141	30	2.0	30	96	0	111	23	31	10	35	1.88
36060--36116	23	2.5	22	83	11	71	8	8	1	80	0.97
36065--36115	17	3.3	15	76	10	50	5	7	1	84	0.85
37060--37116	19	2.8	21	71	10	55	63	7	8	21	1.47
37051--37114	29	2.2	28	81	10	74	65	6	9	18	1.42
37100--37141	18	2.3	18	84	8	50	64	7	4	23	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45100--45134	16	2.2	16	89	0	52	17	8	17	57	1.64
49034--49125	47	2.0	47	91	0	148	30	15	21	32	1.94
49034--49146	47	2.4	47	86	0	127	30	14	21	34	1.93
49233--49277	24	1.9	23	86	13	65	42	6	11	40	1.67
51155--51343	56	3.4	56	86	4	265	37	7	11	43	1.69
51156--51360	112	1.8	112	86	4	297	37	6	11	44	1.67
51979--52032	5	10.8	5	91	0	90	24	38	16	20	1.92
51982--52032	20	2.5	20	100	0	102	25	39	15	19	1.91
52287--52330	3	14.7	3	90	0	70	0	38	0	61	0.96
52802--53053	126	2.0	126	99	0	495	31	13	21	33	1.92
59230--59283	20	2.6	21	80	11	67	33	3	0	62	1.12
62997--63875	99	8.9	99	77	4	668	17	30	17	34	1.93
63041--63875	148	5.6	146	76	8	677	17	30	17	34	1.93
63039--63875	49	16.9	49	74	5	590	17	30	17	34	1.93
64640--64720	41	2.0	41	90	0	126	13	23	16	46	1.82
72082--72344	30	8.9	30	74	7	232	37	3	25	33	1.72
72077--72378	59	5.1	57	77	11	263	36	3	26	33	1.73
72082--72378	118	2.5	119	87	4	413	36	3	26	32	1.73
73770--73796	7	3.9	7	100	0	54	40	0	0	59	0.98
78905--79020	34	3.4	34	85	2	162	19	15	31	32	1.93
84331--84380	22	2.3	22	79	6	57	52	0	4	44	1.20
89527--89566	21	1.9	21	89	0	62	52	10	10	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92301--92421	27	4.3	26	76	16	109	23	7	9	59	1.54
92329--92421	26	3.2	30	74	19	83	23	6	8	61	1.48
92297--92423	57	2.2	57	83	9	163	25	7	9	58	1.55
92330--92453	57	2.1	59	83	5	155	26	8	8	56	1.58
94128--94219	29	3.1	29	72	9	78	34	5	23	35	1.78
94141--94238	29	3.4	29	75	2	90	37	2	27	32	1.68
94140--94301	59	2.8	58	82	1	171	33	6	29	30	1.82
94168--94632	59	7.9	57	82	7	426	32	3	29	35	1.75
94258--94632	88	4.3	87	81	9	413	31	2	30	35	1.72
94259--94632	29	12.7	29	80	8	373	31	2	29	35	1.72

Tables:   1

The End!