Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010046.1 Kokia drynarioides strain JFW-HI SEQ_124814, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37


Found at i:1099 original size:6 final size:6

Alignment explanation


    Indices: 1090--1118  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1080 AAAGAAAATT

                                              
       1090 AAAAA- AAAAAC AAAAAC AAAAAC AAAAAC
          1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC

       1119 CAGATTAATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.22
   6   18  0.78

ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00


Consensus pattern (6 bp):   
AAAAAC

Done.