Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010051.1 Kokia drynarioides strain JFW-HI SEQ_124820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4134
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:248 original size:136 final size:137

Alignment explanation


    Indices: 1--255  Score: 467
    Period size: 136  Copynumber: 1.9  Consensus size: 137

                                                                             
          1 GGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATC
          1 GGAAGATTTGCTCGTTTCGAGCCTCGTTTGGG--TTCTTCTCAGTGTCTCATCAGGAAGATGATC

                    *       *                                                
         66 CCATCACTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTTAGT
         64 CCATCACTATTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTTAGT

                     
        131 ATCCCATCT
        129 ATCCCATCT

                                                                             
        140 GGAAGATTTGCTCGTTTCGAGCCTCGTTTGGG-TCTTCTCAGTGTCTCATCAGGAAGATGATCCC
          1 GGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTCTTCTCAGTGTCTCATCAGGAAGATGATCCC

                                                                
        204 ATCACTATTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTT
         66 ATCACTATTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTT

        256 NNNNNNNNNN


Statistics
Matches: 114,  Mismatches: 2, Indels: 3
        0.96            0.02        0.03

Matches are distributed among these distances:
 136   82  0.72
 139   32  0.28

ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36


Consensus pattern (137 bp):   
GGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTTCTTCTCAGTGTCTCATCAGGAAGATGATCCC
ATCACTATTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTTAGTAT
CCCATCT
Done.