Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010052.1 Kokia drynarioides strain JFW-HI SEQ_124822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2165
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35


Found at i:682 original size:114 final size:114

Alignment explanation


    Indices: 482--712  Score: 453
    Period size: 114  Copynumber: 2.0  Consensus size: 114

        472 CAGGCCTTTT

                                                                             
        482 AGGGCTTTCTCCAGTCTCAATCTTACCAACTTTGATCGCATTTTCAATCATTTCCCCCGACATGA
          1 AGGGCTTTCTCCAGTCTCAATCTTACCAACTTTGATCGCATTTTCAATCATTTCCCCCGACATGA

                                                             
        547 CCATATCGAAGAAACTCTTGGTAGCGTTTCCTAGCAGATGATTTAGGTA
         66 CCATATCGAAGAAACTCTTGGTAGCGTTTCCTAGCAGATGATTTAGGTA

                                        *                                    
        596 AGGGCTTTCTCCAGTCTCAATCTTACCAGCTTTGATCGCATTTTCAATCATTTCCCCCGACATGA
          1 AGGGCTTTCTCCAGTCTCAATCTTACCAACTTTGATCGCATTTTCAATCATTTCCCCCGACATGA

                                                             
        661 CCATATCGAAGAAACTCTTGGTAGCGTTTCCTAGCAGATGATTTAGGTA
         66 CCATATCGAAGAAACTCTTGGTAGCGTTTCCTAGCAGATGATTTAGGTA

               
        710 AGG
          1 AGG

        713 AGCCTTGAGT


Statistics
Matches: 116,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 114  116  1.00

ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32


Consensus pattern (114 bp):   
AGGGCTTTCTCCAGTCTCAATCTTACCAACTTTGATCGCATTTTCAATCATTTCCCCCGACATGA
CCATATCGAAGAAACTCTTGGTAGCGTTTCCTAGCAGATGATTTAGGTA

Done.