Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010054.1 Kokia drynarioides strain JFW-HI SEQ_124826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:122 original size:17 final size:17

Alignment explanation


    Indices: 100--133  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

         90 TGTTAGTAAG

                   *         
        100 CATTGTCGTTGCATTTT
          1 CATTGTCATTGCATTTT

                             
        117 CATTGTCATTGCATTTT
          1 CATTGTCATTGCATTTT

        134 AGTGTTAGTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.15, C:0.18, G:0.15, T:0.53


Consensus pattern (17 bp):   
CATTGTCATTGCATTTT

Found at i:1198 original size:38 final size:38

Alignment explanation


    Indices: 1156--1236  Score: 144
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       1146 TGAGTCTATT

                    *                *            
       1156 CAGAATTGTGCCCAAAATTGTCACTGCATGACGATGTC
          1 CAGAATTGCGCCCAAAATTGTCACTACATGACGATGTC

                                                  
       1194 CAGAATTGCGCCCAAAATTGTCACTACATGACGATGTC
          1 CAGAATTGCGCCCAAAATTGTCACTACATGACGATGTC

                 
       1232 CAGAA
          1 CAGAA

       1237 ATATCGTTGC


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  38   41  1.00

ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23


Consensus pattern (38 bp):   
CAGAATTGCGCCCAAAATTGTCACTACATGACGATGTC
Done.