Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010061.1 Kokia drynarioides strain JFW-HI SEQ_124835, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6193
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37


Found at i:183 original size:6 final size:6

Alignment explanation


    Indices: 158--196  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        148 ACAATTCATA

                      *   *  *                           
        158 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCA
          1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA

        197 ATTTTGATCA


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46


Consensus pattern (6 bp):   
TCACTT

Done.