Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010069.1 Kokia drynarioides strain JFW-HI SEQ_124846, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 122896
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Warning! 26 characters in sequence are not A, C, G, or T
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--33 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34 TACTTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:101 original size:37 final size:36
Alignment explanation
Indices: 13--103 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 36
3 TATATATATA
13 TATATATATATATATATATATTACTTATTATATCTT
1 TATATATATATATATATATATTACTTATTATATCTT
* * *
49 TATTATTTATATATATTTCTATTACTTATTATAATCTT
1 TA-TATATATATATATATATATTACTTATTAT-ATCTT
87 TATATATA-ACTATATAT
1 TATATATATA-TATATAT
104 TACTTTGTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
36 3 0.06
37 37 0.79
38 7 0.15
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (36 bp):
TATATATATATATATATATATTACTTATTATATCTT
Found at i:1072 original size:14 final size:15
Alignment explanation
Indices: 1053--1098 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
1043 CTTGAAAGTA
*
1053 TAAAAATAAA-AAGG
1 TAAAAATAAATAAAG
1067 TAAAAATTAAATAAAG
1 TAAAAA-TAAATAAAG
1083 T-AAAATAAAGTAAAG
1 TAAAAATAAA-TAAAG
1098 T
1 T
1099 TTGAGTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 10 0.36
15 14 0.50
16 4 0.14
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (15 bp):
TAAAAATAAATAAAG
Found at i:11353 original size:26 final size:27
Alignment explanation
Indices: 11279--11365 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
11269 ATTAGCCCTT
11279 AGGCTGGTAGAAAAATCATCCTCGAAC
1 AGGCTGGTAGAAAAATCATCCTCGAAC
*
11306 AGGCTGGTAGAAAAATCATCCTCGAAT
1 AGGCTGGTAGAAAAATCATCCTCGAAC
* *
11333 AGGCTAGTAG-AAAATCATCCTCAAAC
1 AGGCTGGTAGAAAAATCATCCTCGAAC
11359 AGGCTGG
1 AGGCTGG
11366 CAAAATTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.36
27 35 0.64
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
AGGCTGGTAGAAAAATCATCCTCGAAC
Found at i:22315 original size:28 final size:27
Alignment explanation
Indices: 22257--22321 Score: 67
Period size: 28 Copynumber: 2.4 Consensus size: 27
22247 AACATCAATA
* *
22257 GCCATAAAGGCTTTCTTTTCAGAGTTC
1 GCCATAAAGGCTTCCTTTCCAGAGTTC
* * *
22284 GCCATAAGGGCTTACCTTTCCAGATTTT
1 GCCATAAAGGCTT-CCTTTCCAGAGTTC
*
22312 GCCACAAAGG
1 GCCATAAAGG
22322 TATTTCCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 12 0.40
28 18 0.60
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (27 bp):
GCCATAAAGGCTTCCTTTCCAGAGTTC
Found at i:29575 original size:85 final size:86
Alignment explanation
Indices: 29477--29655 Score: 324
Period size: 85 Copynumber: 2.1 Consensus size: 86
29467 TACTATTATT
*
29477 TTTTCTAATCATTTATTGGTGATAACTTATATTATTACGTGCATGGATGGGTGAAATTTATTAAA
1 TTTT-TAATCATTTATTGGTGATAACCTATATTATTACGTGCATGGATGGGTGAAATTTATTAAA
*
29542 TTTTATTCATCAAATTTATCAA
65 TTTTATTCATCAAAGTTATCAA
29564 TTTTTAA-CATTTATTGGTGATAACCTATATTATTACGTGCATGGATGGGTGAAATTTATTAAAT
1 TTTTTAATCATTTATTGGTGATAACCTATATTATTACGTGCATGGATGGGTGAAATTTATTAAAT
29628 TTTATTCATCAAAGTTATCAA
66 TTTATTCATCAAAGTTATCAA
29649 TTTTTAA
1 TTTTTAA
29656 GTTAGAAAAA
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
85 83 0.92
86 3 0.03
87 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (86 bp):
TTTTTAATCATTTATTGGTGATAACCTATATTATTACGTGCATGGATGGGTGAAATTTATTAAAT
TTTATTCATCAAAGTTATCAA
Found at i:30496 original size:21 final size:22
Alignment explanation
Indices: 30450--30511 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
30440 TATTTCTCAT
* *
30450 GAAAAAAGTGAACAAAATGTAC
1 GAAAAAAATGAACAAAATATAC
*
30472 -AAAAAAATGAAGAAAA-ATAC
1 GAAAAAAATGAACAAAATATAC
*
30492 GAAAAAAATTAA-AAAATATA
1 GAAAAAAATGAACAAAATATA
30512 TATTTTTTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 7 0.21
21 27 0.79
ACGTcount: A:0.69, C:0.05, G:0.11, T:0.15
Consensus pattern (22 bp):
GAAAAAAATGAACAAAATATAC
Found at i:31988 original size:28 final size:28
Alignment explanation
Indices: 31948--32004 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
31938 GTGTATCACA
31948 ATATTATAGAGGTACGAGTTCTAATTCT
1 ATATTATAGAGGTACGAGTTCTAATTCT
*
31976 ATATTATAGAGGTATGAGTTCTAATTCT
1 ATATTATAGAGGTACGAGTTCTAATTCT
32004 A
1 A
32005 CTTTCAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (28 bp):
ATATTATAGAGGTACGAGTTCTAATTCT
Found at i:33203 original size:3 final size:3
Alignment explanation
Indices: 33195--33234 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
33185 TCACTATTAT
33195 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
33235 ATAAAATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:34921 original size:40 final size:41
Alignment explanation
Indices: 34834--35091 Score: 270
Period size: 40 Copynumber: 6.5 Consensus size: 41
34824 TTCTATAGCT
* *
34834 TTAGTGGTAAAAGATTGGATTG-CTTCAATCTGCCC-CATGA
1 TTAG-GGTAAAAGATTGGATGGTCTTCAATCTGCCCTCATGG
* * * *
34874 TCT-GGGTAAGAGATCGAATGGTCTTCAATCTACCCTC-TGG
1 T-TAGGGTAAAAGATTGGATGGTCTTCAATCTGCCCTCATGG
* * *
34914 TTAGGGTAAAAGATTGGATTG-CTTCAATATG-TCTCATGG
1 TTAGGGTAAAAGATTGGATGGTCTTCAATCTGCCCTCATGG
* * *
34953 TTGGGGTAAAAGATTGGATGGTTTTCAATCTGCCCTC-TAG
1 TTAGGGTAAAAGATTGGATGGTCTTCAATCTGCCCTCATGG
34993 TTAGGGTAAAAGATTGGAT--TACTTCAATCTGCCC-CATGG
1 TTAGGGTAAAAGATTGGATGGT-CTTCAATCTGCCCTCATGG
35032 TTAGGGTAAAAGATTGGATGGTCTTCAATCTG-CCTCATGG
1 TTAGGGTAAAAGATTGGATGGTCTTCAATCTGCCCTCATGG
* *
35072 -TCGAGATAAAAGATTGGATG
1 TTAG-GGTAAAAGATTGGATG
35092 TGTTGACTTT
Statistics
Matches: 181, Mismatches: 24, Indels: 26
0.78 0.10 0.11
Matches are distributed among these distances:
38 5 0.03
39 81 0.45
40 89 0.49
41 6 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (41 bp):
TTAGGGTAAAAGATTGGATGGTCTTCAATCTGCCCTCATGG
Found at i:35063 original size:79 final size:78
Alignment explanation
Indices: 34834--35065 Score: 329
Period size: 79 Copynumber: 2.9 Consensus size: 78
34824 TTCTATAGCT
* * * *
34834 TTAGTGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGATCTGGGTAAGAGATCGAATGGTCTT
1 TTAG-GGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGT-TGGGTAAAAGATTGGATGGTCTT
* *
34899 CAATCTACCCTCTGG
64 CAATCTGCCCTCTAG
* * * *
34914 TTAGGGTAAAAGATTGGATTGCTTCAATATGTCTCATGGTTGGGGTAAAAGATTGGATGGTTTTC
1 TTAGGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTT-GGGTAAAAGATTGGATGGTCTTC
34979 AATCTGCCCTCTAG
65 AATCTGCCCTCTAG
*
34993 TTAGGGTAAAAGATTGGATTACTTCAATCTGCCCCATGGTTAGGGTAAAAGATTGGATGGTCTTC
1 TTAGGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTT-GGGTAAAAGATTGGATGGTCTTC
35058 AATCTGCC
65 AATCTGCC
35066 TCATGGTCGA
Statistics
Matches: 135, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 1 0.01
79 130 0.96
80 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (78 bp):
TTAGGGTAAAAGATTGGATTGCTTCAATCTGCCCCATGGTTGGGTAAAAGATTGGATGGTCTTCA
ATCTGCCCTCTAG
Found at i:35746 original size:12 final size:12
Alignment explanation
Indices: 35729--35760 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
35719 TGAGAAGATA
35729 TCAAAATATTAG
1 TCAAAATATTAG
*
35741 TCAAAACATTAG
1 TCAAAATATTAG
35753 TCAAAATA
1 TCAAAATA
35761 ACAAATGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28
Consensus pattern (12 bp):
TCAAAATATTAG
Found at i:45608 original size:3 final size:3
Alignment explanation
Indices: 45600--45625 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
45590 TATTTTTCTA
45600 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
45626 AAGGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:50282 original size:10 final size:9
Alignment explanation
Indices: 50246--50287 Score: 54
Period size: 10 Copynumber: 4.9 Consensus size: 9
50236 ATCATTTTGA
50246 AATTTTT-G
1 AATTTTTAG
50254 AA-TTTTA-
1 AATTTTTAG
50261 AATTTTTAG
1 AATTTTTAG
50270 AATTTTATAG
1 AATTTT-TAG
50280 AATTTTTA
1 AATTTTTA
50288 ATTAATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 6 0.20
8 7 0.23
9 8 0.27
10 9 0.30
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (9 bp):
AATTTTTAG
Found at i:50477 original size:24 final size:24
Alignment explanation
Indices: 50449--50495 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
50439 TTGGTGTAGT
50449 ATTTTGAAATAAAAAAAATACTTC
1 ATTTTGAAATAAAAAAAATACTTC
50473 ATTTTGAAATAAAAAAAATACTT
1 ATTTTGAAATAAAAAAAATACTT
50496 ACTTAGTAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.34
Consensus pattern (24 bp):
ATTTTGAAATAAAAAAAATACTTC
Found at i:50760 original size:24 final size:23
Alignment explanation
Indices: 50717--50762 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
50707 TTTTATAAAC
* *
50717 TTTTATAGAATTTTGGAATTTTT
1 TTTTATAAAATTTTGAAATTTTT
50740 TTTTATAAATATTTTGAAATTTT
1 TTTTATAAA-ATTTTGAAATTTT
50763 AAATATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (23 bp):
TTTTATAAAATTTTGAAATTTTT
Found at i:50762 original size:23 final size:23
Alignment explanation
Indices: 50717--50762 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
50707 TTTTATAAAC
*
50717 TTTTATAGAATTTTGGAATTTTT
1 TTTTATAGAATTTTGGAAATTTT
*
50740 TTTTATA-AATATTTTGAAATTTT
1 TTTTATAGAAT-TTTGGAAATTTT
50763 AAATATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (23 bp):
TTTTATAGAATTTTGGAAATTTT
Found at i:53745 original size:494 final size:494
Alignment explanation
Indices: 52798--53783 Score: 1593
Period size: 494 Copynumber: 2.0 Consensus size: 494
52788 ACGCCACAGT
* *
52798 TTGGCAAAATAAGGAAAACAATTCAATTACAAAATATTTGATCTTTGAAAAGCGAGGGTTTGAAA
1 TTGGCAAAATAAGGAAAACAATTCAATTACAAAATATTTGATCTTTGAAAAACGAGGGTTCGAAA
*
52863 TTTCATTCCCCATCTATATGCCATGAATAGTACCAACTTCAAAAGATCCTCACAGCAAATGTGTT
66 TTTCATTCCCCATCTATATGCCATGAATAGTACCAACTTCAAAAGATCCTCACAACAAATGTGTT
* *
52928 CTCTGGCGGAGTCCTTGTTAATCCTACTTCCTCGAAAGTCCTAAGGAGGGAAGACAATTGGGGTA
131 CTCTGGAGGAGTCCTTGTTAATCCTACTTCCTCGAAAGTCCTAAGGAGGGAAGACAATCGGGGTA
*
52993 AGTTCATAGAACTTAGTGAGTTCCAAGATAGACCAGCATAAGTACACATGAATCAACAGAACATC
196 AGTTCATAGAACTTAGTGAGTTCCAAGATAGACCAACATAAGTACACATGAATCAACAGAACATC
* *
53058 TCAACTTAATAAGACACAATATTCGCCCAATGGCCGGTACCAAACATAGGCGGACTCTAGGCAAT
261 TCAACTTAACAAGACACAATATTCGCCCAATGGCCGGCACCAAACATAGGCGGACTCTAGGCAAT
* * *
53123 TCACCCGTTGGCGAACCCCAATCTTCTTGCCTTAGACAACATCCCTCTTTGACATATACACTTCA
326 TCACCCGCTGGCAAACCCCAATCTTCTTGCCTTAGACAACATCCCTCTTTAACATATACACTTCA
* * * *
53188 TCCATGCGACATGAAGACAACCTTCTTTATGTAAGCCCAAACCCTAGTCCATTTAAGAGATTCTT
391 TCCATGCAACATGAAGACAACCTTCTTCATGTAAGCCAAAACCCTAGCCCATTTAAGAGATTCTT
* *
53253 CTCTTTATTGTTTCTTTTGTTATGCCCCACCAATCTGGC
456 CTCTTCATTGTTTCTTTTGTTATACCCCACCAATCTGGC
* *
53292 TTGGCAAAATAAGGAAAACAATTTAATTACAAAATATTTGATCTTTGAAAAATG-GTGGTTCGAA
1 TTGGCAAAATAAGGAAAACAATTCAATTACAAAATATTTGATCTTTGAAAAACGAG-GGTTCGAA
*
53356 ATTTCATTTCCCCATCTATATGCCATGCATAGTACCAACTTCAAAAGATCCTCACAACAAATGTG
65 ATTTCA-TTCCCCATCTATATGCCATGAATAGTACCAACTTCAAAAGATCCTCACAACAAATGTG
* *
53421 TTCTTTGGAGGAGTCCTTGTTAATCCTACTTCCTCGAAAGTCCTAAGGTGGGAAGACAATCGGGG
129 TTCTCTGGAGGAGTCCTTGTTAATCCTACTTCCTCGAAAGTCCTAAGGAGGGAAGACAATCGGGG
*
53486 TAAGTTCATAGAACTTAGTGAGTTCCAAGATAGACCAACATAAGTACACATGAATTAACAGAACA
194 TAAGTTCATAGAACTTAGTGAGTTCCAAGATAGACCAACATAAGTACACATGAATCAACAGAACA
* * * *
53551 TCTCAACTTAACAGGACACACTATTCGCCCAATGG-CGGCACCAACCATAGGCGGAC-CATGGGC
259 TCTCAACTTAACAAGACACAATATTCGCCCAATGGCCGGCACCAAACATAGGCGGACTC-TAGGC
* * *
53614 AATTCACCCGCTGGCAAATCCCAGTCTTCTTGCCTTAGACAACGTCCCTCTTTAACATATACACT
323 AATTCACCCGCTGGCAAACCCCAATCTTCTTGCCTTAGACAACATCCCTCTTTAACATATACACT
* * *
53679 TCATCCATTCAACATGAAGGCAACCTTCTTCATGTAAGCCAAAACCCTAGCCCGTTTCAA-AGAT
388 TCATCCATGCAACATGAAGACAACCTTCTTCATGTAAGCCAAAACCCTAGCCCATTT-AAGAGAT
**
53743 TCTTCTCTTCATTGTTTCTTTTGTTATACCTTACCAATCTG
452 TCTTCTCTTCATTGTTTCTTTTGTTATACCCCACCAATCTG
53784 ATTTATAAGG
Statistics
Matches: 453, Mismatches: 35, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
493 2 0.00
494 237 0.52
495 214 0.47
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (494 bp):
TTGGCAAAATAAGGAAAACAATTCAATTACAAAATATTTGATCTTTGAAAAACGAGGGTTCGAAA
TTTCATTCCCCATCTATATGCCATGAATAGTACCAACTTCAAAAGATCCTCACAACAAATGTGTT
CTCTGGAGGAGTCCTTGTTAATCCTACTTCCTCGAAAGTCCTAAGGAGGGAAGACAATCGGGGTA
AGTTCATAGAACTTAGTGAGTTCCAAGATAGACCAACATAAGTACACATGAATCAACAGAACATC
TCAACTTAACAAGACACAATATTCGCCCAATGGCCGGCACCAAACATAGGCGGACTCTAGGCAAT
TCACCCGCTGGCAAACCCCAATCTTCTTGCCTTAGACAACATCCCTCTTTAACATATACACTTCA
TCCATGCAACATGAAGACAACCTTCTTCATGTAAGCCAAAACCCTAGCCCATTTAAGAGATTCTT
CTCTTCATTGTTTCTTTTGTTATACCCCACCAATCTGGC
Found at i:65874 original size:3 final size:3
Alignment explanation
Indices: 65866--65891 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
65856 TTTGCATGGA
65866 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
65892 AATAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:65896 original size:3 final size:3
Alignment explanation
Indices: 65890--65925 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
65880 GATGATGATG
*
65890 ATA ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
65926 CCAAGTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:67788 original size:20 final size:21
Alignment explanation
Indices: 67760--67804 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
67750 CATTTTTTTC
*
67760 TTTATAATTTATTTAT-ATTT
1 TTTAGAATTTATTTATCATTT
*
67780 TTTAGAATTTTTTTATCATTT
1 TTTAGAATTTATTTATCATTT
67801 TTTA
1 TTTA
67805 TCCAAAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTAGAATTTATTTATCATTT
Found at i:73191 original size:51 final size:50
Alignment explanation
Indices: 73065--73260 Score: 290
Period size: 50 Copynumber: 3.9 Consensus size: 50
73055 TTTATTTATC
*
73065 TAAATTGTTTTGTTCAGATTTAGTGTTTTATATATAA-A-AAATATTAATT
1 TAAATTGTTTTGTTCAGATCTAGTGTTTTATATA-AATATAAATATTAATT
* * *
73114 TAAATTTTTTTGTTCAGATCTGGTGTTTTATATAAATATAAATATTGATT
1 TAAATTGTTTTGTTCAGATCTAGTGTTTTATATAAATATAAATATTAATT
*
73164 TAAATTGTTTTTGTTCAGATCTAGTGTTTTATATAAATATAAATATTTATT
1 TAAATTG-TTTTGTTCAGATCTAGTGTTTTATATAAATATAAATATTAATT
*
73215 TAAATTGTTTTGTTCAGATCT-GATGTTTTACATAAATATAAATATT
1 TAAATTGTTTTGTTCAGATCTAG-TGTTTTATATAAATATAAATATT
73261 TACTTGTATT
Statistics
Matches: 135, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
48 2 0.01
49 33 0.24
50 52 0.39
51 48 0.36
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.51
Consensus pattern (50 bp):
TAAATTGTTTTGTTCAGATCTAGTGTTTTATATAAATATAAATATTAATT
Found at i:73250 original size:50 final size:50
Alignment explanation
Indices: 73057--73284 Score: 286
Period size: 50 Copynumber: 4.6 Consensus size: 50
73047 TTTCAGATTT
* *
73057 TATTTATCTAAATTGTTTTGTTCAGAT-TTAGTGTTTTATATATAA-A-AAA
1 TATTTATTTAAATTGTTTTGTTCAGATCTGA-TGTTTTATATA-AATATAAA
* * *
73106 TATTAATTTAAATTTTTTTGTTCAGATCTGGTGTTTTATATAAATATAAA
1 TATTTATTTAAATTGTTTTGTTCAGATCTGATGTTTTATATAAATATAAA
*
73156 TATTGATTTAAATTGTTTTTGTTCAGATCT-AGTGTTTTATATAAATATAAA
1 TATTTATTTAAATTG-TTTTGTTCAGATCTGA-TGTTTTATATAAATATAAA
*
73207 TATTTATTTAAATTGTTTTGTTCAGATCTGATGTTTTACATAAATATAAA
1 TATTTATTTAAATTGTTTTGTTCAGATCTGATGTTTTATATAAATATAAA
* ** *
73257 TATTTACTTGTATTG-TTTGTTTAGATCT
1 TATTTATTTAAATTGTTTTGTTCAGATCT
73285 TGTATTTTAC
Statistics
Matches: 159, Mismatches: 14, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
48 2 0.01
49 48 0.30
50 61 0.38
51 48 0.30
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (50 bp):
TATTTATTTAAATTGTTTTGTTCAGATCTGATGTTTTATATAAATATAAA
Found at i:73250 original size:101 final size:99
Alignment explanation
Indices: 73065--73260 Score: 313
Period size: 101 Copynumber: 2.0 Consensus size: 99
73055 TTTATTTATC
* *
73065 TAAATTGTTTTGTTCAGATTTAGTGTTTTATATATAAAAAATATTAATTTAAATTTTTTTGTTCA
1 TAAATTGTTTTGTTCAGATCTAGTGTTTTATATATAAAAAATATTAATTTAAATTGTTTTGTTCA
* *
73130 GATCTGGTGTTTTATATAAATATAAATATTGATT
66 GATCTGATGTTTTACATAAATATAAATATTGATT
*
73164 TAAATTGTTTTTGTTCAGATCTAGTGTTTTATATA-AATATAAATATTTATTTAAATTGTTTTGT
1 TAAATTG-TTTTGTTCAGATCTAGTGTTTTATATATAA-A-AAATATTAATTTAAATTGTTTTGT
73228 TCAGATCTGATGTTTTACATAAATATAAATATT
63 TCAGATCTGATGTTTTACATAAATATAAATATT
73261 TACTTGTATT
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
99 9 0.10
100 27 0.30
101 53 0.60
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.51
Consensus pattern (99 bp):
TAAATTGTTTTGTTCAGATCTAGTGTTTTATATATAAAAAATATTAATTTAAATTGTTTTGTTCA
GATCTGATGTTTTACATAAATATAAATATTGATT
Found at i:75800 original size:183 final size:183
Alignment explanation
Indices: 75492--75857 Score: 732
Period size: 183 Copynumber: 2.0 Consensus size: 183
75482 ACTTTAAAAA
75492 AATGCGTACCCATAAGTCTGTGTCTGTCGCTTTTTACACGGTTTTAATTTTTTTTTTCTGGTTTA
1 AATGCGTACCCATAAGTCTGTGTCTGTCGCTTTTTACACGGTTTTAATTTTTTTTTTCTGGTTTA
75557 GTTTTTCATGTTTCATCTTGTGAAAATCTTCACTGAGTTCATGTGATATGGAGGATGAACTGACT
66 GTTTTTCATGTTTCATCTTGTGAAAATCTTCACTGAGTTCATGTGATATGGAGGATGAACTGACT
75622 AATTTGAATCTACTGGATGAAGAGAGGGATGCGTTTAGAGAGGAGGCTTCAGT
131 AATTTGAATCTACTGGATGAAGAGAGGGATGCGTTTAGAGAGGAGGCTTCAGT
75675 AATGCGTACCCATAAGTCTGTGTCTGTCGCTTTTTACACGGTTTTAATTTTTTTTTTCTGGTTTA
1 AATGCGTACCCATAAGTCTGTGTCTGTCGCTTTTTACACGGTTTTAATTTTTTTTTTCTGGTTTA
75740 GTTTTTCATGTTTCATCTTGTGAAAATCTTCACTGAGTTCATGTGATATGGAGGATGAACTGACT
66 GTTTTTCATGTTTCATCTTGTGAAAATCTTCACTGAGTTCATGTGATATGGAGGATGAACTGACT
75805 AATTTGAATCTACTGGATGAAGAGAGGGATGCGTTTAGAGAGGAGGCTTCAGT
131 AATTTGAATCTACTGGATGAAGAGAGGGATGCGTTTAGAGAGGAGGCTTCAGT
75858 GGTGGATAAT
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 183 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.39
Consensus pattern (183 bp):
AATGCGTACCCATAAGTCTGTGTCTGTCGCTTTTTACACGGTTTTAATTTTTTTTTTCTGGTTTA
GTTTTTCATGTTTCATCTTGTGAAAATCTTCACTGAGTTCATGTGATATGGAGGATGAACTGACT
AATTTGAATCTACTGGATGAAGAGAGGGATGCGTTTAGAGAGGAGGCTTCAGT
Found at i:90101 original size:123 final size:123
Alignment explanation
Indices: 89882--90131 Score: 446
Period size: 123 Copynumber: 2.0 Consensus size: 123
89872 AAGTCAGTGA
* *
89882 TGTTTGGTGTAATTTTCTTTCATTTTATTATACTTATGTTACTAATGTCACTACATTTAATATCA
1 TGTTTGGTGTAATTTTCTTTCATTTTATTATACATATGATACTAATGTCACTACATTTAATATCA
89947 GTATGGCGTCTTGAGATGTCAGTACAGGGATCTATCTTAAAAGATCAAAGTAGGAAAG
66 GTATGGCGTCTTGAGATGTCAGTACAGGGATCTATCTTAAAAGATCAAAGTAGGAAAG
* * *
90005 TGTTTGGTGTAATTTTCTTTCATTTTATTATACATATGATACTAATGTCACTACATTTAGTGTTA
1 TGTTTGGTGTAATTTTCTTTCATTTTATTATACATATGATACTAATGTCACTACATTTAATATCA
*
90070 GTATGGCGTCTTGAGATGTCAGTATAGGGATCTATCTTAAAAGATCAAAGTAGGAAAG
66 GTATGGCGTCTTGAGATGTCAGTACAGGGATCTATCTTAAAAGATCAAAGTAGGAAAG
90128 TGTT
1 TGTT
90132 CAAGGCTGTC
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (123 bp):
TGTTTGGTGTAATTTTCTTTCATTTTATTATACATATGATACTAATGTCACTACATTTAATATCA
GTATGGCGTCTTGAGATGTCAGTACAGGGATCTATCTTAAAAGATCAAAGTAGGAAAG
Found at i:102070 original size:24 final size:26
Alignment explanation
Indices: 102037--102086 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
102027 TTTTTTTTGA
102037 AAAATAATTTTTA-TATA-TTATTTT
1 AAAATAATTTTTATTATATTTATTTT
*
102061 AAAATTATTTTTATTATATTTATTTT
1 AAAATAATTTTTATTATATTTATTTT
102087 TACATCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.52
25 4 0.17
26 7 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
AAAATAATTTTTATTATATTTATTTT
Found at i:102372 original size:13 final size:13
Alignment explanation
Indices: 102354--102378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102344 TATTATAATG
102354 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
102367 TTTTTCTTTTTT
1 TTTTTCTTTTTT
102379 TGTAACTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:107498 original size:42 final size:41
Alignment explanation
Indices: 107417--107501 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
107407 TTGTTATTAA
* **
107417 ATTTTAATAAAATTATTATAAATAATAAATAATTTAATAAT
1 ATTTTAATAAAAATATTATAAATAATAAATAATAAAATAAT
**
107458 ATTTTAATAAAAATATTACTAAATACA-ATTTAATAAAATAAT
1 ATTTTAATAAAAATATTA-TAAATA-ATAAATAATAAAATAAT
107500 AT
1 AT
107502 ATAATTTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
41 17 0.46
42 19 0.51
43 1 0.03
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (41 bp):
ATTTTAATAAAAATATTATAAATAATAAATAATAAAATAAT
Found at i:118458 original size:13 final size:13
Alignment explanation
Indices: 118440--118473 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
118430 AAAAAGTAAT
*
118440 TTAATTAATTTAA
1 TTAATTAATATAA
*
118453 TTAATTGATATAA
1 TTAATTAATATAA
118466 TTAATTAA
1 TTAATTAA
118474 ATGAATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
TTAATTAATATAA
Found at i:119735 original size:3 final size:3
Alignment explanation
Indices: 119729--119754 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
119719 AATAATAATA
119729 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
119755 ATAAGAGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:120261 original size:28 final size:28
Alignment explanation
Indices: 120205--120261 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
120195 ATGATATGCG
* *
120205 TCAAAAAATAACAAAAAATATTTTTTTT
1 TCAAAAAATAACAAAAAATAATTTATTT
120233 TCAAAAAA-AA-AAAATAAGTAATTTATTT
1 TCAAAAAATAACAAAA-AA-TAATTTATTT
120261 T
1 T
120262 TCTGAACTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 4 0.16
28 17 0.68
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (28 bp):
TCAAAAAATAACAAAAAATAATTTATTT
Found at i:120578 original size:17 final size:16
Alignment explanation
Indices: 120556--120608 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 16
120546 TTCTCTAGTA
120556 ATTATATATAAATAAAT
1 ATTATATATAAA-AAAT
*
120573 ATTATAATTTCAAAAAAT
1 ATTAT-ATAT-AAAAAAT
*
120591 AGTA-ATATAAAAAAT
1 ATTATATATAAAAAAT
120606 ATT
1 ATT
120609 TTTAAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 9 0.30
16 3 0.10
17 5 0.17
18 10 0.33
19 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (16 bp):
ATTATATATAAAAAAT
Found at i:120626 original size:19 final size:20
Alignment explanation
Indices: 120604--120649 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
120594 AATATAAAAA
120604 ATATTTTTAAA-TAAATTCC
1 ATATTTTTAAATTAAATTCC
120623 ATA-TTTTAAATTAAATTCC
1 ATATTTTTAAATTAAATTCC
120642 A-ATTTTTA
1 ATATTTTTA
120650 TTACTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATTTTTAAATTAAATTCC
Found at i:120631 original size:18 final size:18
Alignment explanation
Indices: 120608--120647 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
120598 TAAAAAATAT
120608 TTTTAAA-TAAATTCCATA
1 TTTTAAATTAAATTCCA-A
120626 TTTTAAATTAAATTCCAA
1 TTTTAAATTAAATTCCAA
120644 TTTT
1 TTTT
120648 TATTACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTTAAATTAAATTCCAA
Found at i:120695 original size:18 final size:19
Alignment explanation
Indices: 120672--120708 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
120662 TTTATAATCA
120672 TTTTT-AAATCTGGAATTT
1 TTTTTAAAATCTGGAATTT
*
120690 TTTTTAAAATCTTGAATTT
1 TTTTTAAAATCTGGAATTT
120709 ATTTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (19 bp):
TTTTTAAAATCTGGAATTT
Found at i:120713 original size:18 final size:19
Alignment explanation
Indices: 120677--120715 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
120667 AATCATTTTT
*
120677 AAATCTGGAATTTTTTTTA
1 AAATCTGGAATTTTATTTA
*
120696 AAATCTTGAA-TTTATTTA
1 AAATCTGGAATTTTATTTA
120714 AA
1 AA
120716 TATATTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (19 bp):
AAATCTGGAATTTTATTTA
Found at i:121863 original size:17 final size:16
Alignment explanation
Indices: 121841--121944 Score: 81
Period size: 17 Copynumber: 6.4 Consensus size: 16
121831 TCAACTTATT
121841 TTAAATTTATTTTAAGA
1 TTAAATTTATTTTAA-A
121858 TTAAATTTATTTTAAA
1 TTAAATTTATTTTAAA
*
121874 TTTAAATTTA----AAT
1 -TTAAATTTATTTTAAA
* *
121887 TTAAATTTAATTTAAGT
1 TTAAATTTATTTTAA-A
121904 TTAAATTTATATTTAAA
1 TTAAATTTAT-TTTAAA
* *
121921 TTTAAAATTATTATAAA
1 -TTAAATTTATTTTAAA
121938 TTTAAAT
1 -TTAAAT
121945 AAATAAAAGT
Statistics
Matches: 73, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
12 9 0.12
13 2 0.03
16 3 0.04
17 45 0.62
18 14 0.19
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TTAAATTTATTTTAAA
Found at i:121877 original size:6 final size:6
Alignment explanation
Indices: 121840--121944 Score: 105
Period size: 6 Copynumber: 18.2 Consensus size: 6
121830 CTCAACTTAT
* *
121840 TTTAAA TTT-AT TTTAAGA -TTAAA TTT-AT TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
121886 TTTAAA TTT-AA TTTAAG TTTAAA TTTATA TTTAAA TTTAAA ATT--A
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
121931 TTATAAA TTTAAA T
1 TT-TAAA TTTAAA T
121945 AAATAAAAGT
Statistics
Matches: 81, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
4 2 0.02
5 15 0.19
6 61 0.75
7 3 0.04
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:121893 original size:29 final size:29
Alignment explanation
Indices: 121836--121924 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
121826 GAAACTCAAC
*
121836 TTATTTTAAATTT-ATTTTAAGA-TTAAAT
1 TTATTTTAAATTTAAATTTAA-ATTTAAAT
121864 TTATTTTAAATTTAAATTTAAATTTAAAT
1 TTATTTTAAATTTAAATTTAAATTTAAAT
* * *
121893 TTAATTTAAGTTTAAATTTATATTTAAAT
1 TTATTTTAAATTTAAATTTAAATTTAAAT
121922 TTA
1 TTA
121925 AAATTATTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 14 0.25
29 41 0.75
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (29 bp):
TTATTTTAAATTTAAATTTAAATTTAAAT
Found at i:121937 original size:29 final size:29
Alignment explanation
Indices: 121836--121941 Score: 99
Period size: 35 Copynumber: 3.5 Consensus size: 29
121826 GAAACTCAAC
*
121836 TTATTTTAAATTTAT-TTTAAGA-TTAAAT
1 TTATTATAAATTTATATTTAA-ATTTAAAT
* *
121864 TTATTTTAAATTTAAATTTAAATTTAAAT
1 TTATTATAAATTTATATTTAAATTTAAAT
*
121893 TTAATTTAAGTTTAAATTTATATTTAAATTTAAAA
1 TT-A-TT-A---TAAATTTATATTTAAATTTAAAT
121928 TTATTATAAATTTA
1 TTATTATAAATTTA
121942 AATAAATAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
28 15 0.23
29 21 0.32
30 1 0.02
31 2 0.03
32 1 0.02
33 2 0.03
34 1 0.02
35 23 0.35
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
TTATTATAAATTTATATTTAAATTTAAAT
Found at i:122539 original size:3 final size:3
Alignment explanation
Indices: 122531--122606 Score: 73
Period size: 3 Copynumber: 25.0 Consensus size: 3
122521 AGTAGGGCAC
* * *
122531 TAA TAA TAA TAA TAA TTAT TAA TAA TAAA TAA TAT TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
* **
122578 TAA TAA TAC TTT TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
122607 AAAAATCTGA
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
2 2 0.03
3 52 0.88
4 5 0.08
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:122555 original size:16 final size:16
Alignment explanation
Indices: 122534--122578 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
122524 AGGGCACTAA
122534 TAATAATAATAATTAT
1 TAATAATAATAATTAT
122550 TAATAATAAATAA-TAT
1 TAATAAT-AATAATTAT
*
122566 TAATAACAATAAT
1 TAATAATAATAAT
122579 AATAATACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 5 0.19
16 16 0.62
17 5 0.19
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATAATAATAATTAT
Done.