Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001007.1 Kokia drynarioides strain JFW-HI SEQ_112215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1473
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34


Found at i:1188 original size:25 final size:25

Alignment explanation


    Indices: 1159--1206  Score: 78
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1149 TGAAGCTCTT

                 *        *          
       1159 ATAACCTGTTGCCTCATTAAAAATC
          1 ATAACATGTTGCCTAATTAAAAATC

                                   
       1184 ATAACATGTTGCCTAATTAAAAA
          1 ATAACATGTTGCCTAATTAAAAA

       1207 CCTTATCAGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31


Consensus pattern (25 bp):   
ATAACATGTTGCCTAATTAAAAATC
Done.