Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010070.1 Kokia drynarioides strain JFW-HI SEQ_124848, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2421
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35


Found at i:855 original size:29 final size:28

Alignment explanation


    Indices: 796--861  Score: 82
    Period size: 29  Copynumber: 2.4  Consensus size: 28

        786 ATAAATATTA

                                      * 
        796 AATTTATACATGAATTTTAGTTTAATGC
          1 AATTTATACATGAATTTTAGTTTAATAC

                                      *   
        824 AATTTGATACATGAATTTT-GATTTAGTAC
          1 AATTT-ATACATGAATTTTAG-TTTAATAC

                      
        853 AA-TTATACA
          1 AATTTATACA

        862 CTAAAACTTG


Statistics
Matches: 34,  Mismatches: 2, Indels: 5
        0.83            0.05        0.12

Matches are distributed among these distances:
  27    5  0.15
  28    8  0.24
  29   21  0.62

ACGTcount: A:0.38, C:0.08, G:0.11, T:0.44


Consensus pattern (28 bp):   
AATTTATACATGAATTTTAGTTTAATAC
Done.