genome.fa.s10075.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010075.1 Kokia drynarioides strain JFW-HI SEQ_124853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198805

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--84	3	22.7	3	71	8	50	55	0	2	42	1.15
13--81	12	6.2	12	75	16	58	53	0	2	43	1.15
19--71	27	2.0	27	85	7	72	52	0	3	43	1.19
1124--1265	29	4.9	30	80	12	170	33	28	4	32	1.79
1115--1278	29	5.7	28	79	5	166	34	29	4	31	1.77
1115--1301	58	3.2	59	82	6	224	34	27	4	33	1.78
1256--1313	29	2.0	30	82	3	73	36	25	5	32	1.78
1115--1303	87	2.2	87	80	7	215	34	27	4	33	1.78
1564--1755	96	2.0	96	84	6	255	29	18	13	38	1.89
6731--6786	27	2.1	27	100	0	112	17	3	30	48	1.65
10775--10828	14	3.9	14	77	0	54	46	1	3	48	1.30
10799--10852	19	2.6	21	77	14	58	42	3	7	46	1.49
11074--11133	22	2.7	22	89	0	84	35	25	11	28	1.91
11159--11224	22	3.0	22	88	0	96	27	19	21	31	1.97
23216--23245	14	2.1	14	100	0	60	36	0	33	30	1.58
33316--33366	21	2.4	21	83	0	75	56	11	1	29	1.46
35628--35666	19	2.1	19	85	9	53	41	2	10	46	1.51
38129--38168	14	2.7	15	88	7	55	60	2	2	35	1.24
47772--47874	36	2.9	36	92	0	161	35	22	13	28	1.92
47954--48150	23	8.6	23	81	0	232	47	14	4	32	1.65
47955--48150	46	4.3	46	89	0	293	47	14	4	32	1.65
52438--52802	193	1.9	190	82	3	462	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56839--56882	7	6.1	7	85	15	63	0	27	0	72	0.85
56838--56883	22	2.1	22	92	8	76	0	26	0	73	0.83
58742--58769	11	2.5	11	100	0	56	28	17	17	35	1.93
60343--60397	27	2.0	27	96	0	101	52	10	16	20	1.73
62111--62225	40	2.9	39	80	6	124	29	16	19	34	1.94
62595--62705	56	2.0	56	80	3	125	30	29	18	20	1.97
65970--66166	98	2.0	98	94	0	349	26	19	19	34	1.96
69008--69107	38	2.5	40	83	4	123	26	18	22	34	1.96
69008--69123	40	2.9	39	73	8	101	29	17	19	33	1.95
71509--71564	2	28.0	2	100	0	112	50	0	0	50	1.00
79462--79507	18	2.6	18	89	6	67	34	23	10	30	1.89
79473--79519	18	2.8	17	87	9	62	38	25	6	29	1.81
82514--82550	18	2.1	18	89	0	56	24	27	0	48	1.51
84949--85037	21	4.1	21	84	5	90	53	10	23	12	1.68
84949--85017	21	3.3	21	87	2	95	55	8	24	11	1.64
99712--99816	26	4.0	26	72	9	79	26	19	21	32	1.97
127783--127823	3	13.7	3	89	0	64	68	0	26	4	1.10
127783--127823	12	3.4	12	96	0	73	68	0	26	4	1.10
141589--141733	78	1.9	77	86	4	211	35	15	20	28	1.93
142389--142415	13	2.1	13	100	0	54	29	14	22	33	1.94
143057--143089	6	5.5	6	96	0	57	69	3	0	27	1.03
152564--152593	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156118--156200	20	4.2	20	77	7	89	43	7	4	44	1.53
165257--165288	15	2.1	15	94	0	55	37	0	37	25	1.56
171978--172015	19	2.0	19	89	0	58	28	0	7	63	1.23
172221--172250	11	2.7	11	94	0	51	13	6	6	73	1.24
172762--172943	96	1.9	96	83	6	235	34	14	21	28	1.93
173204--173538	29	11.5	29	74	12	283	29	1	31	36	1.68
173195--173533	59	5.8	58	87	4	461	30	1	32	35	1.68
173644--173825	96	1.9	96	83	6	235	34	14	21	28	1.93
174077--174586	59	8.7	59	87	3	674	31	1	30	35	1.69
174078--174587	117	4.4	117	87	3	679	31	1	30	35	1.69
172677--174432	882	2.0	872	98	1	3422	35	8	25	29	1.86
176836--176911	37	2.0	38	82	7	93	34	11	2	51	1.53
176943--176993	26	2.0	26	92	0	84	29	27	1	41	1.67
180266--180317	24	2.2	24	89	0	77	40	1	1	55	1.22
181292--181387	48	2.0	48	100	0	192	29	14	35	20	1.93
186922--187022	31	3.4	30	75	14	111	28	16	6	47	1.73
186883--187031	59	2.5	59	86	6	196	25	15	6	53	1.65
186942--187031	28	3.1	27	73	13	90	25	14	6	53	1.65
188230--188271	22	1.9	22	85	9	59	64	0	0	35	0.94
188835--188881	16	2.9	16	75	12	51	34	17	2	46	1.59
196027--196090	13	4.8	13	72	22	53	46	29	0	23	1.52
196027--196090	27	2.4	26	78	19	69	46	29	0	23	1.52

Tables:   1

The End!