Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010088.1 Kokia drynarioides strain JFW-HI SEQ_124869, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 967

Length: 1612
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.28

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:892 original size:57 final size:57

Alignment explanation


    Indices: 821--942  Score: 228
    Period size: 57  Copynumber: 2.2  Consensus size: 57

        811 TTGGAAGATA

                                                   *                 
        821 TATAA-TTTTTATGCTAAAATGATATTTTAGTCTAATTTTAGAAACATCAAACGAAT
          1 TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT

                                                                     
        877 TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT
          1 TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT

                     
        934 TATAATTTT
          1 TATAATTTT

        943 GAATTCTTTA


Statistics
Matches: 64,  Mismatches: 1, Indels: 1
        0.97            0.02        0.02

Matches are distributed among these distances:
  56    5  0.08
  57   59  0.92

ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43


Consensus pattern (57 bp):   
TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT
Done.