Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010098.1 Kokia drynarioides strain JFW-HI SEQ_124881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1396
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32


Found at i:594 original size:24 final size:24

Alignment explanation


    Indices: 567--617  Score: 84
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        557 ACGTAAGCTT

                                    
        567 TTCCATTAAAGAAATCACCAAGTC
          1 TTCCATTAAAGAAATCACCAAGTC

                        *   *       
        591 TTCCATTAAAGATATCTCCAAGTC
          1 TTCCATTAAAGAAATCACCAAGTC

               
        615 TTC
          1 TTC

        618 TATATCATAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31


Consensus pattern (24 bp):   
TTCCATTAAAGAAATCACCAAGTC
Done.