Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010099.1 Kokia drynarioides strain JFW-HI SEQ_124883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2747
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2708 original size:4 final size:4

Alignment explanation


    Indices: 2686--2747  Score: 54
    Period size: 4  Copynumber: 15.2  Consensus size: 4

       2676 AACACATTAC

                 *     *                     *   *      *               
       2686 CTTT ATTT CCTT C-TT CTTT CTTT CCTCT CCTT CTTC CTTT CTTT CTTT
          1 CTTT CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT

                             
       2734 CTTT CCTTT CTTT C
          1 CTTT -CTTT CTTT C


Statistics
Matches: 46,  Mismatches: 9, Indels: 6
        0.75            0.15        0.10

Matches are distributed among these distances:
   3    3  0.07
   4   36  0.78
   5    7  0.15

ACGTcount: A:0.02, C:0.34, G:0.00, T:0.65


Consensus pattern (4 bp):   
CTTT

Found at i:2720 original size:17 final size:15

Alignment explanation


    Indices: 2686--2741  Score: 55
    Period size: 15  Copynumber: 3.8  Consensus size: 15

       2676 AACACATTAC

                *          
       2686 CTTTATTTCCTTCTT
          1 CTTTCTTTCCTTCTT

                           
       2701 CTTTCTTTCC-TC-T
          1 CTTTCTTTCCTTCTT

             *               
       2714 CCTTC-TTCCTTTCTTT
          1 CTTTCTTTCC-TTC-TT

                        
       2730 CTTTCTTTCCTT
          1 CTTTCTTTCCTT

       2742 TCTTTC


Statistics
Matches: 33,  Mismatches: 3, Indels: 9
        0.73            0.07        0.20

Matches are distributed among these distances:
  12    4  0.12
  13    5  0.15
  14    4  0.12
  15    9  0.27
  16    7  0.21
  17    4  0.12

ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64


Consensus pattern (15 bp):   
CTTTCTTTCCTTCTT
Done.