Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010100.1 Kokia drynarioides strain JFW-HI SEQ_124884, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1878
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:54 original size:12 final size:12

Alignment explanation


    Indices: 39--64  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         29 CTTCTCTTTA

                        
         39 TTCTCTTCTTCC
          1 TTCTCTTCTTCC

                        
         51 TTCTCTTCTTCC
          1 TTCTCTTCTTCC

              
         63 TT
          1 TT

         65 TTCCTTCAGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62


Consensus pattern (12 bp):   
TTCTCTTCTTCC
Done.