Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010109.1 Kokia drynarioides strain JFW-HI SEQ_124895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1498
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39


Found at i:96 original size:23 final size:21

Alignment explanation


    Indices: 45--88  Score: 61
    Period size: 23  Copynumber: 2.0  Consensus size: 21

         35 CGAAGTACTT

                             *   
         45 AACAGTAAGCACACACAGTGC
          1 AACAGTAAGCACACACAATGC

                                   
         66 AATCCAGTAAGCACACACAATGC
          1 AA--CAGTAAGCACACACAATGC

         89 TGAACAGTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  21    2  0.10
  23   18  0.90

ACGTcount: A:0.43, C:0.30, G:0.16, T:0.11


Consensus pattern (21 bp):   
AACAGTAAGCACACACAATGC

Found at i:201 original size:24 final size:26

Alignment explanation


    Indices: 163--210  Score: 66
    Period size: 24  Copynumber: 1.9  Consensus size: 26

        153 TCTATATGAG

                                       
        163 CATAATCTCTCATAT-TCATCATTTCT
          1 CATAATCTCTCATATATCA-CATTTCT

                                    
        189 CATAAT-T-TCATATATCACATTT
          1 CATAATCTCTCATATATCACATTT

        211 ACATTTCTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  24   11  0.52
  25    4  0.19
  26    6  0.29

ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46


Consensus pattern (26 bp):   
CATAATCTCTCATATATCACATTTCT
Done.