Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010114.1 Kokia drynarioides strain JFW-HI SEQ_124901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41984
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Found at i:757 original size:86 final size:86
Alignment explanation
Indices: 612--821 Score: 312
Period size: 86 Copynumber: 2.4 Consensus size: 86
602 CGTGGGTTTG
** * * * * * * *
612 ATTTGGTCTTCTTATCAGTATCTCATCGGGAAGATGACTGCGTCGTTTGTTTCAATCCGCCTCTC
1 ATTTGGTCCACTTCTCAGTATTTCATCAGGAAGCTAACTGCGTCATCTGTTTCAATCCGCCTCTC
677 TGTATCTCATCAGGAAGACGA
66 TGTATCTCATCAGGAAGACGA
* *
698 ATTTGGTCCACTTCTCAGTATTTCATCAGGAAGCTAACTGCGTCATCTGTTTCAATCCGCTTCTT
1 ATTTGGTCCACTTCTCAGTATTTCATCAGGAAGCTAACTGCGTCATCTGTTTCAATCCGCCTCTC
763 TGTATCTCATCAGGAAGACGA
66 TGTATCTCATCAGGAAGACGA
*
784 ATTTAGTCCACTTCTCAGTATTTCATCAGGAAGCTAAC
1 ATTTGGTCCACTTCTCAGTATTTCATCAGGAAGCTAAC
822 CTTTTTATCA
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 112 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (86 bp):
ATTTGGTCCACTTCTCAGTATTTCATCAGGAAGCTAACTGCGTCATCTGTTTCAATCCGCCTCTC
TGTATCTCATCAGGAAGACGA
Found at i:12895 original size:59 final size:59
Alignment explanation
Indices: 12797--13104 Score: 332
Period size: 59 Copynumber: 5.4 Consensus size: 59
12787 TTCGGACATC
* * * * * *
12797 TGGGAGTAAAATAGTGATTTTTTGGAAGTTTCGGGGTCAAAAATTGGATTTTAGGAAGTT
1 TGGGGGTAAAATGGT-AATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTT
*
12857 TGGGGGTAAAATGGTAATTTTTAGAAGTTTCGAGGTCAAAAATGGGATTTTTGG-A---
1 TGGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTT
* * * *
12912 -----GTAAAATAGTTATTTTTGGAAGTTT-TAGGGTCAAAAATGGGATTTTTGGAAGCT
1 TGGGGGTAAAATGGTAATTTTTGGAAGTTTCGA-GGTCAAAAATGGGATTTTTGGAAGTT
** *
12966 TGACGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAATT
1 TGGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTT
** * *
13025 TGGGGGTAAAATGGTAATTTTTAAAAGTTTC-AGGGTTAAAAATGGGATTTTTGAAAGTT
1 TGGGGGTAAAATGGTAATTTTTGGAAGTTTCGA-GGTCAAAAATGGGATTTTTGGAAGTT
* *
13084 CGAGGGTAAAATGGTAATTTT
1 TGGGGGTAAAATGGTAATTTT
13105 GGATAGCCTA
Statistics
Matches: 211, Mismatches: 25, Indels: 25
0.81 0.10 0.10
Matches are distributed among these distances:
49 1 0.00
50 43 0.20
51 1 0.00
58 2 0.01
59 150 0.71
60 14 0.07
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (59 bp):
TGGGGGTAAAATGGTAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTT
Found at i:12908 original size:30 final size:29
Alignment explanation
Indices: 12815--13107 Score: 161
Period size: 30 Copynumber: 10.3 Consensus size: 29
12805 AAATAGTGAT
* *
12815 TTTTTGGAAGTTTCGGGGTCAAAAATTGGA
1 TTTTTGGAAGTTTCGAGGT-AAAAATGGGA
* * * *
12845 TTTTAGGAAGTTTGGGGGT-AAAATGGTAA
1 TTTTTGGAAGTTTCGAGGTAAAAATGG-GA
*
12874 TTTTTAGAAGTTTCGAGGTCAAAAATGGGA
1 TTTTTGGAAGTTTCGAGGT-AAAAATGGGA
* **
12904 TTTTTGG-AG--T--A---AAATA-GTTA
1 TTTTTGGAAGTTTCGAGGTAAAAATGGGA
*
12924 TTTTTGGAAGTTT-TAGGGTCAAAAATGGGA
1 TTTTTGGAAGTTTCGA-GGT-AAAAATGGGA
* *
12954 TTTTTGGAAGCTT-GACGGT-AAAATGGTAA
1 TTTTTGGAAGTTTCGA-GGTAAAAATGG-GA
12983 TTTTTGGAAGTTTCGAGGTCAAAAATGGGA
1 TTTTTGGAAGTTTCGAGGT-AAAAATGGGA
* * * *
13013 TTTTTGGAAATTTGGGGGT-AAAATGGTAA
1 TTTTTGGAAGTTTCGAGGTAAAAATGG-GA
**
13042 TTTTTAAAAGTTTC-AGGGTTAAAAATGGGA
1 TTTTTGGAAGTTTCGA-GG-TAAAAATGGGA
* *
13072 TTTTTGAAAG-TTCGAGGGT-AAAATGGTA
1 TTTTTGGAAGTTTCGA-GGTAAAAATGGGA
*
13100 ATTTTGGA
1 TTTTTGGA
13108 TAGCCTATGG
Statistics
Matches: 205, Mismatches: 36, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
20 9 0.04
21 6 0.03
23 1 0.00
24 1 0.00
25 1 0.00
27 1 0.00
28 34 0.17
29 55 0.27
30 76 0.37
31 21 0.10
ACGTcount: A:0.31, C:0.04, G:0.28, T:0.37
Consensus pattern (29 bp):
TTTTTGGAAGTTTCGAGGTAAAAATGGGA
Found at i:12955 original size:109 final size:110
Alignment explanation
Indices: 12799--13020 Score: 356
Period size: 109 Copynumber: 2.0 Consensus size: 110
12789 CGGACATCTG
* * * **
12799 GGAGTAAAATAGTGATTTTTTGGAAGTTTCGGGGTCAAAAATTGGATTTTAGGAAGTTTGGGGGT
1 GGAGTAAAATAGTGATTTTTTGGAAGTTTCAGGGTCAAAAATGGGATTTTAGGAAGCTTGACGGT
12864 AAAATGGTAATTTTTAGAAGTTTCGAGGTCAAAAATGGGATTTTT
66 AAAATGGTAATTTTTAGAAGTTTCGAGGTCAAAAATGGGATTTTT
* * *
12909 GGAGTAAAATAGTTA-TTTTTGGAAGTTTTAGGGTCAAAAATGGGATTTTTGGAAGCTTGACGGT
1 GGAGTAAAATAGTGATTTTTTGGAAGTTTCAGGGTCAAAAATGGGATTTTAGGAAGCTTGACGGT
*
12973 AAAATGGTAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTT
66 AAAATGGTAATTTTTAGAAGTTTCGAGGTCAAAAATGGGATTTTT
13018 GGA
1 GGA
13021 AATTTGGGGG
Statistics
Matches: 103, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
109 89 0.86
110 14 0.14
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.36
Consensus pattern (110 bp):
GGAGTAAAATAGTGATTTTTTGGAAGTTTCAGGGTCAAAAATGGGATTTTAGGAAGCTTGACGGT
AAAATGGTAATTTTTAGAAGTTTCGAGGTCAAAAATGGGATTTTT
Found at i:12957 original size:29 final size:29
Alignment explanation
Indices: 12923--13107 Score: 162
Period size: 30 Copynumber: 6.3 Consensus size: 29
12913 TAAAATAGTT
*
12923 ATTTTTGGAAGTTTTAGGGTCAAAAATGGG
1 ATTTTTGGAAGTTTGAGGGT-AAAAATGGG
* * *
12953 ATTTTTGGAAGCTTGACGGT-AAAATGGTA
1 ATTTTTGGAAGTTTGAGGGTAAAAATGG-G
12982 ATTTTTGGAAGTTTCGA-GGTCAAAAATGGG
1 ATTTTTGGAAGTTT-GAGGGT-AAAAATGGG
* * *
13012 ATTTTTGGAAATTTGGGGGT-AAAATGGTA
1 ATTTTTGGAAGTTTGAGGGTAAAAATGG-G
** *
13041 ATTTTTAAAAGTTTCAGGGTTAAAAATGGG
1 ATTTTTGGAAGTTTGAGGG-TAAAAATGGG
* * *
13071 ATTTTTGAAAGTTCGAGGGT-AAAATGGT
1 ATTTTTGGAAGTTTGAGGGTAAAAATGGG
*
13099 AATTTTGGA
1 ATTTTTGGA
13108 TAGCCTATGG
Statistics
Matches: 126, Mismatches: 21, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
28 28 0.22
29 32 0.25
30 52 0.41
31 14 0.11
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (29 bp):
ATTTTTGGAAGTTTGAGGGTAAAAATGGG
Found at i:14189 original size:15 final size:16
Alignment explanation
Indices: 14171--14210 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
14161 TATTATTAAT
14171 ATTATTATTGA-TGTC
1 ATTATTATTGATTGTC
14186 ATTATTATT-ATTGTC
1 ATTATTATTGATTGTC
*
14201 ATTAATATTG
1 ATTATTATTG
14211 TTAATGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 21 0.95
ACGTcount: A:0.30, C:0.05, G:0.10, T:0.55
Consensus pattern (16 bp):
ATTATTATTGATTGTC
Found at i:14904 original size:13 final size:13
Alignment explanation
Indices: 14886--14917 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14876 TCCAAGAATG
14886 TAATTTGGACTTT
1 TAATTTGGACTTT
*
14899 TAATTTGGGCTTT
1 TAATTTGGACTTT
14912 TAATTT
1 TAATTT
14918 TAAATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (13 bp):
TAATTTGGACTTT
Found at i:14963 original size:6 final size:6
Alignment explanation
Indices: 14944--15034 Score: 57
Period size: 6 Copynumber: 15.5 Consensus size: 6
14934 AAATCCATTC
** **
14944 AAATTT -AA-TT AAATTT AAATTT AAA-GC AAATTT AAATTT AAAAAGAT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT --AAATTT
* **
14991 AAATTT AAATTT AACA--T AAATTT AAATTC AAAAAT AAATTT AAA
1 AAATTT AAATTT AA-ATTT AAATTT AAATTT AAATTT AAATTT AAA
15035 CCAATTTAAA
Statistics
Matches: 63, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
4 3 0.05
5 10 0.16
6 45 0.71
7 1 0.02
8 4 0.06
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.37
Consensus pattern (6 bp):
AAATTT
Found at i:14976 original size:17 final size:17
Alignment explanation
Indices: 14944--15034 Score: 87
Period size: 17 Copynumber: 5.2 Consensus size: 17
14934 AAATCCATTC
*
14944 AAATTT-AATTAAATTT
1 AAATTTAAAGTAAATTT
*
14960 AAATTTAAAGCAAATTT
1 AAATTTAAAGTAAATTT
14977 AAATTTAAAAAGATAAATTT
1 AAATTT--AAAG-TAAATTT
14997 AAATTTAACA-TAAATTT
1 AAATTTAA-AGTAAATTT
* *
15014 AAATTCAAAAATAAATTT
1 AAATT-TAAAGTAAATTT
15032 AAA
1 AAA
15035 CCAATTTAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
16 6 0.09
17 27 0.42
18 14 0.22
19 5 0.08
20 12 0.19
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.37
Consensus pattern (17 bp):
AAATTTAAAGTAAATTT
Found at i:14997 original size:37 final size:35
Alignment explanation
Indices: 14953--15034 Score: 112
Period size: 37 Copynumber: 2.3 Consensus size: 35
14943 CAAATTTAAT
14953 TAAATTTAAATTTAA-AGCAAATTTAAATTTAAAAAGA
1 TAAATTTAAATTTAACA-CAAATTTAAA-TTAAAAA-A
* *
14990 TAAATTTAAATTTAACATAAATTTAAATTCAAAAA
1 TAAATTTAAATTTAACACAAATTTAAATTAAAAAA
15025 TAAATTTAAA
1 TAAATTTAAA
15035 CCAATTTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 11 0.26
36 6 0.14
37 24 0.57
38 1 0.02
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (35 bp):
TAAATTTAAATTTAACACAAATTTAAATTAAAAAA
Found at i:15580 original size:3 final size:3
Alignment explanation
Indices: 15572--15603 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15562 CTTTAATCTT
15572 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
15604 CATATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:21600 original size:86 final size:87
Alignment explanation
Indices: 21486--21686 Score: 262
Period size: 86 Copynumber: 2.3 Consensus size: 87
21476 ATTCGGGGGC
* * * **
21486 AAAATGGTAATTTTTTGAAGTTTTGGGGTTAAAATGGGTTTTTTGGAAGTTTTGGGGTTAAAATG
1 AAAATGG-AATTTTTTGAAGTTTAGGGGTAAAAATAGAATTTTTGGAAGTTTTGGGGTTAAAATG
21551 GAATTTTTGGAAGTTTTGGGGTT
65 GAATTTTTGGAAGTTTTGGGGTT
21574 AAAATGG-ATTTTTTGAAGTTTAGGGGTAAAAATAGAATTTTTGGAAGTTTTGGGGTTAAAATGG
1 AAAATGGAATTTTTTGAAGTTTAGGGGTAAAAATAGAATTTTTGGAAGTTTTGGGGTTAAAATGG
* * * *
21638 GATTTTTGGAA-ATTCGAGGGTA
66 AATTTTTGGAAGTTTTG-GGGTT
* *
21660 AAAATAGAATTTTTGGAAAGTTTAGGG
1 AAAATGGAATTTTTTG-AAGTTTAGGG
21687 AACCTCCAGA
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
85 3 0.03
86 72 0.73
87 7 0.07
88 17 0.17
ACGTcount: A:0.30, C:0.00, G:0.29, T:0.40
Consensus pattern (87 bp):
AAAATGGAATTTTTTGAAGTTTAGGGGTAAAAATAGAATTTTTGGAAGTTTTGGGGTTAAAATGG
AATTTTTGGAAGTTTTGGGGTT
Found at i:21658 original size:29 final size:29
Alignment explanation
Indices: 21486--21682 Score: 245
Period size: 29 Copynumber: 6.8 Consensus size: 29
21476 ATTCGGGGGC
*
21486 AAAATGGTAATTTTTTGAAGTTTTGGGGTT
1 AAAATGG-AATTTTTGGAAGTTTTGGGGTT
**
21516 AAAATGGGTTTTTTGGAAGTTTTGGGGTT
1 AAAATGGAATTTTTGGAAGTTTTGGGGTT
21545 AAAATGGAATTTTTGGAAGTTTTGGGGTT
1 AAAATGGAATTTTTGGAAGTTTTGGGGTT
* * *
21574 AAAATGG-ATTTTTTGAAGTTTAGGGGTA
1 AAAATGGAATTTTTGGAAGTTTTGGGGTT
*
21602 AAAATAGAATTTTTGGAAGTTTTGGGGTT
1 AAAATGGAATTTTTGGAAGTTTTGGGGTT
* * * *
21631 AAAATGGGATTTTTGGAA-ATTCGAGGGTA
1 AAAATGGAATTTTTGGAAGTTTTG-GGGTT
*
21660 AAAATAGAATTTTTGGAAAGTTT
1 AAAATGGAATTTTTGG-AAGTTT
21683 AGGGAACCTC
Statistics
Matches: 143, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
28 27 0.19
29 105 0.73
30 9 0.06
31 2 0.01
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTTTGGGGTT
Found at i:22655 original size:15 final size:15
Alignment explanation
Indices: 22622--22660 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
22612 TTTCATTTTT
22622 TTATTAAT-TAATAA
1 TTATTAATATAATAA
* *
22636 TTATTAATATTATTA
1 TTATTAATATAATAA
22651 TTATTAATAT
1 TTATTAATAT
22661 CAAAACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATTAATATAATAA
Found at i:23408 original size:17 final size:17
Alignment explanation
Indices: 23388--23480 Score: 98
Period size: 17 Copynumber: 5.4 Consensus size: 17
23378 TGAACTTCAT
* *
23388 TTTAAATTTATAATAAT
1 TTTAAATTTAAAATAAA
*
23405 TTTAATTTTGAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
23423 TTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAA
23440 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
*
23457 TTT-AATCCTAAAAATAAA
1 TTTAAAT--TTAAAATAAA
23475 TTTAAA
1 TTTAAA
23481 ATGAGTTTGG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.05
17 33 0.52
18 25 0.40
19 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:23444 original size:11 final size:12
Alignment explanation
Indices: 23419--23461 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
23409 ATTTTGAAAA
23419 TAAATTTAAACT
1 TAAATTTAAACT
*
23431 TAAA-TTAAATT
1 TAAATTTAAACT
*
23442 TAAATTTAAA-A
1 TAAATTTAAACT
23453 TAAATTTAA
1 TAAATTTAA
23462 TCCTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAATTTAAACT
Found at i:23480 original size:6 final size:6
Alignment explanation
Indices: 23419--23461 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
23409 ATTTTGAAAA
* *
23419 TAAATT TAAACT TAAA-T TAAATT TAAATT TAAA-A TAAATT TAA
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAA
23462 TCCTAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
5 9 0.28
6 23 0.72
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (6 bp):
TAAATT
Found at i:26584 original size:31 final size:31
Alignment explanation
Indices: 26549--26611 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
26539 TTTAAAAGGG
*
26549 TTAATATGCTATCTGGTACCGGAGTTTGGTT
1 TTAATATGCAATCTGGTACCGGAGTTTGGTT
* * * **
26580 TTAATGTTCAATTTGGTACTTGAGTTTGGTT
1 TTAATATGCAATCTGGTACCGGAGTTTGGTT
26611 T
1 T
26612 CAATGTTAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.19, C:0.10, G:0.24, T:0.48
Consensus pattern (31 bp):
TTAATATGCAATCTGGTACCGGAGTTTGGTT
Found at i:27902 original size:31 final size:30
Alignment explanation
Indices: 27867--27924 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
27857 ATCATTTGCC
*
27867 ACTTGATTTTGGGTTCAATGTTCAGATTGGT
1 ACTTGAGTTTGGGTTCAATGTTC-GATTGGT
* *
27898 ACTTGAGTTTGGTTTTAATGTTCGATT
1 ACTTGAGTTTGGGTTCAATGTTCGATT
27925 TTGTACCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.19, C:0.09, G:0.24, T:0.48
Consensus pattern (30 bp):
ACTTGAGTTTGGGTTCAATGTTCGATTGGT
Found at i:39910 original size:60 final size:58
Alignment explanation
Indices: 39750--39912 Score: 226
Period size: 54 Copynumber: 2.8 Consensus size: 58
39740 TACAATGGAA
* * *
39750 CCCAAATGCTGGAAAATGGGATTGCAGTTGCACCTCTTTGTGAACCCATAAATACTAGTT
1 CCCAAATGGTTGAAAATGGGATTGCA-TTGCA-CTCTTTATGAACCCATAAATACTAGTT
39810 CCCAAATGGTTGAAAATGGGATTGCA---C-CTCTTTATGAACCCATAAATACTAGTT
1 CCCAAATGGTTGAAAATGGGATTGCATTGCACTCTTTATGAACCCATAAATACTAGTT
*
39864 CCCAAATGGTTGAAAATGGGATTGCATTTGCAGCTCATTATGAACCCAT
1 CCCAAATGGTTGAAAATGGGATTGCA-TTGCA-CTCTTTATGAACCCAT
39913 TAATGTACAA
Statistics
Matches: 93, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
54 52 0.56
56 1 0.01
58 1 0.01
60 39 0.42
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (58 bp):
CCCAAATGGTTGAAAATGGGATTGCATTGCACTCTTTATGAACCCATAAATACTAGTT
Done.