genome.fa.s10132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010132.1 Kokia drynarioides strain JFW-HI SEQ_124927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  261070

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1283--1464	29	6.3	29	82	3	143	40	20	19	20	1.92
3358--3384	6	4.5	6	100	0	54	48	0	14	37	1.45
4341--4412	31	2.3	31	85	4	99	52	0	20	26	1.47
4442--4511	36	1.9	36	82	8	88	35	2	37	24	1.70
4549--4584	9	4.0	9	92	0	54	25	11	13	50	1.75
4550--4587	18	2.1	18	95	0	67	26	10	13	50	1.73
7992--8043	18	3.0	18	81	10	56	46	1	0	51	1.12
17523--17600	41	1.9	41	91	0	129	24	2	28	44	1.67
33155--33248	28	3.4	28	87	0	125	24	29	12	32	1.92
37052--37101	25	2.0	25	85	14	68	60	0	2	38	1.09
41377--41408	14	2.3	15	89	10	50	46	3	0	50	1.17
42570--42640	25	2.7	25	77	18	74	46	0	1	52	1.09
42566--42640	27	2.8	25	78	13	80	48	0	1	50	1.09
43119--43170	23	2.3	20	77	22	59	42	0	9	48	1.36
44404--44436	6	5.5	6	100	0	66	33	0	15	51	1.43
47318--47352	15	2.3	15	90	5	52	62	5	0	31	1.18
47470--47517	24	2.0	24	87	0	69	22	8	14	54	1.67
48890--49055	30	5.6	28	75	9	109	37	6	22	33	1.79
55568--55623	17	3.3	17	71	26	55	19	37	1	41	1.62
56091--56154	33	1.9	34	87	3	94	25	9	21	43	1.82
61017--61072	17	3.3	17	73	26	64	19	39	1	39	1.62
61330--61375	20	2.3	20	85	3	58	30	6	2	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65161--65207	6	7.8	6	95	0	76	29	48	4	17	1.65
71910--71980	37	1.9	37	88	0	106	4	14	4	77	1.07
71928--71975	22	2.1	23	88	3	71	0	12	6	81	0.87
71923--71977	27	2.0	27	86	6	76	1	12	5	80	0.97
73763--73851	37	2.4	38	82	1	108	46	5	22	25	1.74
83689--83820	48	2.8	48	94	2	221	24	9	12	53	1.69
83691--83835	48	3.0	47	86	7	186	25	10	13	51	1.72
84261--84417	80	2.0	79	87	1	224	34	19	15	30	1.93
90222--90324	53	1.9	53	98	0	197	55	12	10	21	1.67
91890--91934	17	2.5	17	82	7	54	62	6	13	17	1.52
99063--99108	23	2.0	23	95	0	83	26	10	21	41	1.86
104942--104982	21	2.0	21	85	0	55	41	26	21	9	1.84
108000--108053	24	2.2	24	93	0	90	27	16	9	46	1.78
115843--115885	18	2.4	19	80	11	54	67	0	27	4	1.10
118341--118395	24	2.2	25	87	6	85	30	14	9	45	1.76
127237--127430	34	5.7	34	85	0	271	38	28	13	19	1.89
127233--127449	34	6.4	34	84	6	262	37	29	12	19	1.89
127233--127458	102	2.2	102	84	5	305	38	29	12	19	1.88
131803--131839	18	2.1	18	89	0	56	37	10	24	27	1.88
134182--134220	19	2.1	19	95	0	69	10	17	20	51	1.74
136228--136369	74	1.9	74	86	0	203	33	11	16	38	1.85
143560--143641	41	2.0	41	97	0	155	23	19	8	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147748--147791	22	2.0	23	90	4	72	31	15	11	40	1.83
153509--153559	21	2.4	21	86	0	66	27	19	19	33	1.96
161215--161366	79	1.9	80	85	4	209	34	27	16	21	1.95
161215--161385	79	2.2	80	82	5	195	32	26	17	23	1.97
166976--167024	24	2.0	24	100	0	98	24	12	12	51	1.73
167029--167111	31	2.7	30	83	5	78	34	13	10	40	1.79
167050--167110	31	2.0	31	96	0	113	32	14	11	40	1.82
177283--177354	19	3.7	19	73	17	67	40	1	8	50	1.41
177309--177366	19	3.1	19	75	9	55	39	3	6	50	1.46
177370--177411	13	3.4	13	77	9	52	35	0	0	64	0.94
208603--208647	20	2.2	21	84	8	65	20	37	8	33	1.83
208610--208652	20	2.2	20	95	0	77	23	34	11	30	1.90
209807--209861	24	2.3	23	93	3	92	5	20	5	69	1.29
215132--215162	15	2.1	15	93	0	53	0	16	0	83	0.64
216134--216166	15	2.1	16	88	5	50	12	30	6	51	1.63
216400--216440	18	2.3	18	100	0	82	39	9	24	26	1.86
220370--221031	148	4.5	149	74	6	610	20	31	14	33	1.93
220304--220878	99	5.8	99	82	1	634	20	30	15	33	1.93
220794--221081	99	2.9	99	84	2	296	21	31	13	33	1.92
220571--221073	247	2.0	245	86	2	704	21	31	13	33	1.92
229196--229247	26	2.0	26	85	7	70	53	11	15	19	1.71
230401--230438	20	2.0	19	85	10	51	21	34	0	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231901--231943	17	2.6	17	88	3	61	6	6	2	83	0.88
231903--231944	8	5.1	8	91	5	57	4	7	2	85	0.80
234266--234302	8	4.6	8	93	0	56	40	0	5	54	1.24
236342--236391	11	4.4	11	80	12	57	26	2	26	46	1.64
248043--248081	19	2.0	20	90	5	62	7	12	5	74	1.20

Tables:   1

The End!