Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010134.1 Kokia drynarioides strain JFW-HI SEQ_124929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1453
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37


Found at i:235 original size:23 final size:22

Alignment explanation


    Indices: 158--307  Score: 144
    Period size: 23  Copynumber: 6.5  Consensus size: 22

        148 CGAAATACTT

                                      
        158 AACAGTAAGCACACAAGTGCTGGGGA
          1 AACAGTAAGCACACAAGTGC----GA

                                   
        184 AACAGTAAGCACACACAGTGC-A
          1 AACAGTAAGCACACA-AGTGCGA

             *     *          *    
        206 ATCAGTAGGCACACATAGCGC-A
          1 AACAGTAAGCACACA-AGTGCGA

                    *               
        228 AATCAGTAGGCACACGAAGTGCGA
          1 AA-CAGTAAGCACAC-AAGTGCGA

                                   
        252 AACAGTAAGCACACAAAGTGCGA
          1 AACAGTAAGCACAC-AAGTGCGA

                                    
        275 AACAGTAAGCACACACAGTGCTG-
          1 AACAGTAAGCACACA-AGTGC-GA

                      
        298 AACAGTAAGC
          1 AACAGTAAGC

        308 GCGCTAGCGT


Statistics
Matches: 110,  Mismatches: 8, Indels: 15
        0.83            0.06        0.11

Matches are distributed among these distances:
  22   21  0.19
  23   64  0.58
  24    5  0.05
  26   15  0.14
  27    5  0.05

ACGTcount: A:0.41, C:0.23, G:0.24, T:0.11


Consensus pattern (22 bp):   
AACAGTAAGCACACAAGTGCGA

Done.