Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010138.1 Kokia drynarioides strain JFW-HI SEQ_124934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2395
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36


Found at i:1738 original size:16 final size:16

Alignment explanation


    Indices: 1719--1754  Score: 72
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1709 AAATATGATC

                            
       1719 ATCTAGATCTATTAAA
          1 ATCTAGATCTATTAAA

                            
       1735 ATCTAGATCTATTAAA
          1 ATCTAGATCTATTAAA

                
       1751 ATCT
          1 ATCT

       1755 TATGATAACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39


Consensus pattern (16 bp):   
ATCTAGATCTATTAAA
Done.