Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010139.1 Kokia drynarioides strain JFW-HI SEQ_124937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1146
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35


Found at i:209 original size:19 final size:19

Alignment explanation


    Indices: 163--216  Score: 90
    Period size: 19  Copynumber: 2.8  Consensus size: 19

        153 AGAAATTGAA

                    * *        
        163 TATTATAAAAATAACAAAT
          1 TATTATAACACTAACAAAT

                               
        182 TATTATAACACTAACAAAT
          1 TATTATAACACTAACAAAT

                            
        201 TATTATAACACTAACA
          1 TATTATAACACTAACA

        217 TAACAAATAC


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   33  1.00

ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31


Consensus pattern (19 bp):   
TATTATAACACTAACAAAT
Done.