Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010142.1 Kokia drynarioides strain JFW-HI SEQ_124940, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:343 original size:23 final size:23

Alignment explanation


    Indices: 302--346  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        292 GAATTCTATT

                          *        
        302 AAAGAGGATCAATGGAAACAATA
          1 AAAGAGGATCAATGAAAACAATA

                                   
        325 AAAGAGGATCCAA-GAAAACAAT
          1 AAAGAGGAT-CAATGAAAACAAT

        347 CACTAGTTGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23   17  0.85
  24    3  0.15

ACGTcount: A:0.58, C:0.11, G:0.20, T:0.11


Consensus pattern (23 bp):   
AAAGAGGATCAATGAAAACAATA
Done.