Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010148.1 Kokia drynarioides strain JFW-HI SEQ_124950, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1740
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.35

Warning! 139 characters in sequence are not A, C, G, or T


Found at i:1457 original size:12 final size:12

Alignment explanation


    Indices: 1440--1475  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

       1430 TTTGTCACTA

                        
       1440 TTTAAAAATATT
          1 TTTAAAAATATT

                        
       1452 TTTAAAAATA-T
          1 TTTAAAAATATT

                  *     
       1463 TTTAAAGATATT
          1 TTTAAAAATATT

             
       1475 T
          1 T

       1476 ACTCATTTTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  11   10  0.45
  12   12  0.55

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (12 bp):   
TTTAAAAATATT

Found at i:1465 original size:11 final size:11

Alignment explanation


    Indices: 1440--1475  Score: 54
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       1430 TTTGTCACTA

                        
       1440 TTTAAAAATATT
          1 TTTAAAAATA-T

                       
       1452 TTTAAAAATAT
          1 TTTAAAAATAT

                  *    
       1463 TTTAAAGATAT
          1 TTTAAAAATAT

              
       1474 TT
          1 TT

       1476 ACTCATTTTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  11   13  0.57
  12   10  0.43

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (11 bp):   
TTTAAAAATAT
Done.