genome.fa.s10152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010152.1 Kokia drynarioides strain JFW-HI SEQ_124955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50115

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5298--5481	49	3.8	49	77	2	199	35	17	29	17	1.93
5299--5533	98	2.4	98	85	1	319	35	17	28	18	1.94
5348--5530	49	3.8	48	74	8	145	35	16	27	19	1.94
5594--5791	99	2.0	98	98	1	378	38	15	22	22	1.91
5887--6621	42	18.3	42	80	8	727	29	26	18	25	1.98
5887--6630	120	6.2	120	82	7	791	29	26	18	25	1.98
5887--6527	200	3.2	201	86	4	835	29	26	18	25	1.98
9855--9960	56	1.9	54	90	3	167	46	17	3	32	1.66
13448--13520	31	2.4	31	88	2	112	28	15	10	45	1.80
13883--13939	21	2.7	21	86	0	69	33	24	15	26	1.95
14606--14886	52	5.4	52	87	2	379	35	24	13	25	1.93
20790--21077	52	5.6	52	82	3	330	35	24	12	27	1.91
22400--22560	60	2.7	59	79	11	186	49	11	14	24	1.77
26810--26877	24	2.8	24	93	0	109	52	8	13	25	1.68
28688--28823	55	2.5	55	86	1	184	29	7	14	48	1.71
29788--30297	59	8.8	58	76	14	382	38	2	26	32	1.71
29963--30005	18	2.3	19	80	4	52	44	0	23	32	1.54
29928--30088	50	3.0	50	75	20	164	39	2	26	31	1.70
30007--30334	29	11.1	29	70	12	163	38	2	26	32	1.71
31286--31368	13	6.4	13	71	17	57	38	3	3	54	1.36
42515--42821	154	2.0	153	98	0	587	36	17	22	23	1.94
43255--43464	29	7.1	29	71	11	149	36	2	27	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43150--43497	59	5.9	58	78	8	310	39	2	25	32	1.70
43150--43493	118	2.9	118	82	3	354	39	2	25	32	1.70
43451--43553	29	3.5	29	71	12	86	45	4	18	31	1.70
43304--43580	59	4.7	56	77	10	209	41	3	23	31	1.72
45442--45483	6	7.3	6	86	5	52	52	2	0	45	1.13
45433--45483	12	4.7	11	82	17	63	50	1	0	47	1.12
47292--47427	11	12.1	11	64	22	52	70	4	3	21	1.20
47295--47429	18	7.3	17	66	20	67	71	4	3	20	1.20
47242--47372	36	3.8	34	67	19	83	68	4	7	19	1.32
47352--47421	27	2.6	27	82	17	83	71	4	1	22	1.12
47352--47400	15	3.2	15	82	8	55	71	4	0	24	1.03
47502--47573	30	2.4	30	79	9	76	61	4	13	20	1.49

Tables:   1

The End!