genome.fa.s10161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010161.1 Kokia drynarioides strain JFW-HI SEQ_124966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174512

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1105--1196	17	5.3	18	84	6	102	56	3	1	39	1.23
1105--1182	6	13.5	6	74	12	65	55	2	1	41	1.22
2833--2924	17	5.3	18	84	6	102	56	3	1	39	1.23
2833--2910	6	13.5	6	74	12	65	55	2	1	41	1.22
3652--4223	199	2.9	198	90	1	921	20	24	18	36	1.95
16033--16475	29	15.2	29	69	13	216	29	3	31	36	1.74
16114--16475	59	6.2	59	81	7	303	29	2	31	36	1.72
16149--16244	28	3.2	30	65	12	81	35	6	28	30	1.82
16238--16474	30	8.1	29	74	15	177	28	1	31	39	1.65
16114--16445	58	5.7	58	80	8	250	28	2	32	36	1.71
16361--16488	59	2.2	58	82	1	157	31	0	28	39	1.62
16390--16488	30	3.3	29	77	13	94	31	1	27	40	1.63
18442--18502	6	10.5	6	77	13	65	52	1	1	44	1.20
18442--18517	17	4.4	17	86	3	98	53	2	1	42	1.23
18443--18501	11	5.2	11	80	10	66	54	1	1	42	1.20
28412--28605	97	2.0	97	84	4	257	38	17	17	27	1.91
28913--29252	29	11.9	29	76	4	233	34	4	27	34	1.76
28913--29256	58	6.0	58	75	8	274	34	4	27	34	1.76
28943--29252	115	2.7	112	77	3	323	34	4	26	34	1.76
28889--29278	29	13.5	30	72	15	159	34	4	26	35	1.76
31117--31245	17	7.5	17	82	3	150	55	4	1	37	1.30
31117--31245	35	3.7	34	86	3	168	55	4	1	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31117--31211	6	16.3	6	69	18	58	54	3	2	40	1.28
31739--32417	50	13.7	49	68	13	302	17	31	16	34	1.92
31681--31999	98	3.2	98	80	4	356	17	31	16	34	1.93
31710--32406	99	7.0	98	74	8	432	16	31	16	34	1.92
31834--32414	298	1.9	298	82	2	720	17	32	16	33	1.92
31852--32422	50	11.5	50	72	12	372	16	32	16	33	1.92
31852--32422	149	3.8	149	81	4	641	16	32	16	33	1.92
36704--36784	29	2.8	28	81	10	83	35	1	23	39	1.63
36771--36979	29	7.3	29	80	5	237	34	5	27	32	1.79
36778--36979	57	3.5	57	78	8	230	33	5	28	33	1.80
36953--37055	30	3.5	29	86	4	109	35	5	21	36	1.78
36968--37053	30	2.9	31	91	3	115	37	4	20	37	1.74
38899--39010	17	6.5	17	82	8	109	54	4	1	39	1.31
38899--39010	35	3.2	33	83	8	134	54	4	1	39	1.31
38899--39010	52	2.2	52	86	3	154	54	4	1	39	1.31
38899--39010	6	19.3	6	68	17	58	54	4	1	39	1.31
47010--47039	2	15.0	2	100	0	60	50	0	0	50	1.00
48707--48734	7	4.0	7	100	0	56	71	0	0	28	0.86
49361--49399	19	2.0	20	90	5	62	46	0	0	53	1.00
49513--49542	15	1.9	16	93	6	53	40	0	3	56	1.16
57748--57806	24	2.5	24	88	0	91	50	11	10	27	1.71
58509--58555	22	2.1	22	84	7	60	21	31	0	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58522--58564	20	2.0	22	82	13	54	20	41	0	37	1.53
61932--62004	20	3.7	19	80	15	78	36	1	6	54	1.36
75710--75744	18	1.9	18	88	0	52	34	8	20	37	1.83
77009--77155	64	2.3	64	87	3	199	49	6	8	35	1.59
77136--77165	5	6.0	5	100	0	60	60	20	0	20	1.37
77393--77481	6	14.8	6	88	3	81	16	48	1	33	1.54
81649--81832	98	1.9	99	94	1	325	40	9	14	35	1.79
90826--90866	18	2.3	17	87	8	55	36	12	12	39	1.80
113304--113353	20	2.5	20	83	6	57	54	6	2	38	1.37
115500--115653	77	2.0	77	100	0	308	32	15	12	38	1.86
122895--122944	25	2.0	26	84	11	68	26	2	6	66	1.26
124215--124268	26	2.1	25	83	10	65	64	0	1	33	1.04
124554--124606	26	2.0	25	89	7	79	26	1	0	71	0.96
124563--124632	9	7.8	9	74	16	65	28	0	2	68	1.04
124568--124631	19	3.4	19	74	22	62	28	0	3	68	1.04
124564--124611	16	2.9	16	81	12	53	22	0	0	77	0.78
124606--124706	19	5.6	18	70	15	57	38	1	3	55	1.30
124554--124687	28	4.9	26	75	12	92	33	2	1	62	1.16
137530--137563	7	4.9	7	100	0	68	29	0	41	29	1.57
142159--142204	2	24.5	2	87	12	71	47	0	52	0	1.00
149500--149813	30	10.6	30	76	10	195	34	2	24	38	1.68
149603--149771	59	2.8	60	81	3	198	34	3	23	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149515--149791	89	3.1	85	78	7	234	34	2	24	37	1.69
149544--149813	89	3.0	84	77	8	243	34	2	25	37	1.70
149430--149813	30	12.9	29	75	10	188	36	2	22	37	1.70
150975--151009	16	2.1	17	89	10	54	60	0	0	40	0.97
151921--152044	48	2.6	48	94	0	212	21	24	14	39	1.91
160440--160598	62	2.5	62	88	9	221	62	15	7	14	1.53
160483--160600	62	1.9	62	98	0	227	61	15	7	15	1.54
160917--160948	3	10.7	3	93	0	55	71	0	28	0	0.86
161107--161221	58	2.0	58	89	6	180	33	0	18	46	1.55
161701--161741	21	1.9	22	85	5	57	17	24	17	41	1.89
162175--162213	20	2.0	20	89	0	60	28	25	2	43	1.68
163656--163691	18	2.0	18	88	0	54	33	27	11	27	1.91
165558--165810	30	8.5	30	72	15	95	35	3	22	38	1.70
165558--165748	30	6.4	30	78	7	142	36	2	23	38	1.67
165582--165822	60	4.1	59	73	9	188	34	2	24	37	1.71
165618--165818	30	6.8	30	75	10	110	36	2	21	39	1.69
166961--166995	16	2.1	17	89	10	54	54	0	5	40	1.24
170182--170299	58	2.0	58	100	0	236	42	18	11	27	1.85
170390--170431	2	21.0	2	100	0	84	50	0	0	50	1.00
172491--172552	18	3.3	19	78	17	67	38	0	4	56	1.21
172491--172554	19	3.3	18	81	14	67	37	0	6	56	1.25

Tables:   1

The End!