Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010165.1 Kokia drynarioides strain JFW-HI SEQ_124970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2289
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:491 original size:45 final size:45

Alignment explanation


    Indices: 429--596  Score: 239
    Period size: 45  Copynumber: 3.7  Consensus size: 45

        419 GCATAGCTCA

                   *               *                     
        429 TCAAGCCGAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                             *           
        474 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGTCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                       * 
        519 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                  **           *  * *         
        564 T-ATAGGGAAGGATATCAGGCTGAGTTTGACGAG
          1 TCA-AGCCAAGGATATCAGCCTCAATTTGACGAG

        597 GCATCGCGAT


Statistics
Matches: 112,  Mismatches: 10, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
  44    1  0.01
  45  111  0.99

ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

Done.