Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001018.1 Kokia drynarioides strain JFW-HI SEQ_112230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15290
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:1713 original size:19 final size:19

Alignment explanation


    Indices: 1676--1726  Score: 61
    Period size: 19  Copynumber: 2.8  Consensus size: 19

       1666 AATAAAAGTC

                          *    
       1676 ATACA-ATAT-TAGCTTAT
          1 ATACATATATGTAGGTTAT

                               
       1693 ATACATATATGTAGGTTAT
          1 ATACATATATGTAGGTTAT

               *     *     
       1712 ATATATATAGGTAGG
          1 ATACATATATGTAGG

       1727 GTGGCTGCGG


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  17    5  0.17
  18    4  0.14
  19   20  0.69

ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39


Consensus pattern (19 bp):   
ATACATATATGTAGGTTAT

Found at i:4838 original size:23 final size:21

Alignment explanation


    Indices: 4796--4838  Score: 50
    Period size: 23  Copynumber: 2.0  Consensus size: 21

       4786 TTAGTTATTC

                          **     
       4796 AATTATTATTTTTTTCAATTT
          1 AATTATTATTTTTTAAAATTT

                                  
       4817 AATTATTAGATTTTTTAAAATT
          1 AATTATT--ATTTTTTAAAATT

       4839 GATGTGGACT


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  21    7  0.39
  23   11  0.61

ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60


Consensus pattern (21 bp):   
AATTATTATTTTTTAAAATTT
Done.