Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010181.1 Kokia drynarioides strain JFW-HI SEQ_124988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12677
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:3946 original size:19 final size:19

Alignment explanation


    Indices: 3919--3969  Score: 59
    Period size: 20  Copynumber: 2.6  Consensus size: 19

       3909 AAATATAAAA

                                 
       3919 TTTGAAATTTTT-ATAAATAT
          1 TTTG-AATTTTTGAT-AATAT

                            *   
       3939 TTTGAATTTTTGGATATTAT
          1 TTTGAATTTTT-GATAATAT

                       
       3959 TTTGAATTTTT
          1 TTTGAATTTTT

       3970 TGTGTAATTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  19    7  0.25
  20   19  0.68
  21    2  0.07

ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61


Consensus pattern (19 bp):   
TTTGAATTTTTGATAATAT
Done.