Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010182.1 Kokia drynarioides strain JFW-HI SEQ_124990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3913
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.31

Warning! 138 characters in sequence are not A, C, G, or T


Found at i:402 original size:119 final size:118

Alignment explanation


    Indices: 191--427  Score: 447
    Period size: 119  Copynumber: 2.0  Consensus size: 118

        181 CGATGAGGCC

                                   *                                         
        191 CATTTCTTTTGATTTTATTGCTGCTGGGATGAAGGTGTTTGAGGGTAGGACTGGTACAGATCCTT
          1 CATTTCTTTTGATTTTATTGCTGATGGGATGAAGGTGTTTGAGGGTAGGACTGGTACAGATCCTT

                                                                 
        256 CAGTAACTGATTACTGACTGAAGGATTTACAGAGATTGTTTGTAGAGATGAAT
         66 CAGTAACTGATTACTGACTGAAGGATTTACAGAGATTGTTTGTAGAGATGAAT

                                                                             
        309 NCATTTCTTTTGATTTTATTGCTGATGGGATGAAGGTGTTTGAGGGTAGGACTGGTACAGATCCT
          1 -CATTTCTTTTGATTTTATTGCTGATGGGATGAAGGTGTTTGAGGGTAGGACTGGTACAGATCCT

                 *                                                
        374 TCAGTTACTGATTACTGACTGAAGGATTTACAGAGATTGTTTGTAGAGATGAAT
         65 TCAGTAACTGATTACTGACTGAAGGATTTACAGAGATTGTTTGTAGAGATGAAT

        428 TACCCTGCTG


Statistics
Matches: 116,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 119  116  1.00

ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37


Consensus pattern (118 bp):   
CATTTCTTTTGATTTTATTGCTGATGGGATGAAGGTGTTTGAGGGTAGGACTGGTACAGATCCTT
CAGTAACTGATTACTGACTGAAGGATTTACAGAGATTGTTTGTAGAGATGAAT
Done.