Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010190.1 Kokia drynarioides strain JFW-HI SEQ_125003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1431
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1220 original size:45 final size:45

Alignment explanation


    Indices: 1162--1380  Score: 357
    Period size: 45  Copynumber: 4.9  Consensus size: 45

       1152 CTATAGTATT

                                *                        
       1162 CGGTGGCTCGTCAAATTGAGACTGATATCCTTGGCTTGAGCATTG
          1 CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTG

                                 *           *     *     
       1207 CGGTGGCTCGTCAAATTGAGGTTGATATCCTTGACTTGAACATTG
          1 CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTG

                                                         
       1252 CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTG
          1 CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTG

            **                              *            
       1297 TAGTGGCTCGTCAAATTGAGGCTGATATCCTTAGCTTGAGCATTG
          1 CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTG

                 *         *                       
       1342 CGGTGACTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGA

       1381 TGAGCTATGC


Statistics
Matches: 159,  Mismatches: 15, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  45  159  1.00

ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32


Consensus pattern (45 bp):   
CGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTG

Done.