Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010192.1 Kokia drynarioides strain JFW-HI SEQ_125005, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894

Length: 1491
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:347 original size:88 final size:87

Alignment explanation


    Indices: 198--372  Score: 332
    Period size: 88  Copynumber: 2.0  Consensus size: 87

        188 AATCACCTTG

                                                                             
        198 GGACGATTGCTTCCGTAAGGCTTAGCTGTCCCGTCCTCAGAGGCACAAACATCGTTAGCTTCCAC
          1 GGACGATTGCTTCCGTAAGGCTTAGCTGTCCCGTCCTCAGAGGCACAAACATCGTTAGCTTCCAC

                                  
        263 TCCTTCTTCAAAAAATTTCAGC
         66 TCCTTCTTCAAAAAATTTCAGC

                                                                 *           
        285 NGGACGATTGCTTCCGTAAGGCTTAGCTGTCCCGTCCTCAGAGGCACAAACATTGTTAGCTTCCA
          1 -GGACGATTGCTTCCGTAAGGCTTAGCTGTCCCGTCCTCAGAGGCACAAACATCGTTAGCTTCCA

                                   
        350 CTCCTTCTTCAAAAAATTTCAGC
         65 CTCCTTCTTCAAAAAATTTCAGC

        373 TCTCGGTTAT


Statistics
Matches: 86,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  88   86  1.00

ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28


Consensus pattern (87 bp):   
GGACGATTGCTTCCGTAAGGCTTAGCTGTCCCGTCCTCAGAGGCACAAACATCGTTAGCTTCCAC
TCCTTCTTCAAAAAATTTCAGC
Done.