Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010193.1 Kokia drynarioides strain JFW-HI SEQ_125006, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2871
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1981 original size:13 final size:13

Alignment explanation


    Indices: 1965--1998  Score: 68
    Period size: 13  Copynumber: 2.6  Consensus size: 13

       1955 TTCTCCATGA

                         
       1965 TCGTTCTGTTCAT
          1 TCGTTCTGTTCAT

                         
       1978 TCGTTCTGTTCAT
          1 TCGTTCTGTTCAT

                    
       1991 TCGTTCTG
          1 TCGTTCTG

       1999 CAATGCCGTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.06, C:0.24, G:0.18, T:0.53


Consensus pattern (13 bp):   
TCGTTCTGTTCAT
Done.