Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010196.1 Kokia drynarioides strain JFW-HI SEQ_125011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1905
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.29

Warning! 102 characters in sequence are not A, C, G, or T


Found at i:1246 original size:45 final size:45

Alignment explanation


    Indices: 1182--1317  Score: 182
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1172 GCATAGCTCA

                                       *                 
       1182 TCAAGCCAAGGATATCAGCCTCAGTTTAACGAGCCACCACAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCACAATAC

                                   *              **     
       1227 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGTAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCACAATAC

                 **           *  *              *   *    
       1272 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCACGATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCACAATAC

             
       1317 T
          1 T

       1318 TTATTCCTCC


Statistics
Matches: 78,  Mismatches: 13, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  45   78  1.00

ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCACAATAC

Found at i:1346 original size:21 final size:21

Alignment explanation


    Indices: 1313--1355  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1303 AGCCATCACG

                 *  *      *     
       1313 ATACTTTATTCCTCCCGGGCA
          1 ATACTCTACTCCTCCAGGGCA

                                 
       1334 ATACTCTACTCCTCCAGGGCA
          1 ATACTCTACTCCTCCAGGGCA

             
       1355 A
          1 A

       1356 ATGGACCTTA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28


Consensus pattern (21 bp):   
ATACTCTACTCCTCCAGGGCA
Done.