Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000102.1 Kokia drynarioides strain JFW-HI SEQ_110736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8809
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33


Found at i:8515 original size:22 final size:22

Alignment explanation


    Indices: 8473--8538  Score: 78
    Period size: 22  Copynumber: 3.0  Consensus size: 22

       8463 GCTCTCCGTT

                     *             
       8473 ATTTAGCACGTTTAGTGCTCTCC
          1 ATTTAGCACATTT-GTGCTCTCC

            *                    *
       8496 GTTTAGCACATTTGTGCTCTCT
          1 ATTTAGCACATTTGTGCTCTCC

              *         *        
       8518 ATATAGCACATTGGTGCTCTC
          1 ATTTAGCACATTTGTGCTCTC

       8539 AGTTATTTAG


Statistics
Matches: 37,  Mismatches: 6, Indels: 1
        0.84            0.14        0.02

Matches are distributed among these distances:
  22   26  0.70
  23   11  0.30

ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39


Consensus pattern (22 bp):   
ATTTAGCACATTTGTGCTCTCC
Done.