Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010202.1 Kokia drynarioides strain JFW-HI SEQ_125019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8460
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:1968 original size:31 final size:29

Alignment explanation


    Indices: 1923--1995  Score: 103
    Period size: 31  Copynumber: 2.4  Consensus size: 29

       1913 ACGAACATTC

                                          
       1923 TTATGATTTG-TATCTTTCAAGCATGTAAA
          1 TTATGA-TTGATATCTTTCAAGCATGTAAA

                                           
       1952 TATATGTATTGATATCTTTCAAGCATGTAAA
          1 T-TATG-ATTGATATCTTTCAAGCATGTAAA

              *          
       1983 TTTTGATTGATAT
          1 TTATGATTGATAT

       1996 TAGGTAATTG


Statistics
Matches: 40,  Mismatches: 1, Indels: 6
        0.85            0.02        0.13

Matches are distributed among these distances:
  29    9  0.22
  30   10  0.25
  31   21  0.52

ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47


Consensus pattern (29 bp):   
TTATGATTGATATCTTTCAAGCATGTAAA
Done.